Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 3620.1 1824 100.0
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 3502.2 1824 97.0
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 3075.4 1823 85.4
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2847.4 1849 78.9
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2758.8 1827 76.7
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2728.0 1829 75.2
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2726.4 1832 74.4
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2678.3 1837 72.7
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2638.2 1836 71.7
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2631.7 1834 71.3
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2623.6 1832 71.1
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2621.7 1833 71.2
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2620.1 1833 71.3
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2610.9 1833 71.4
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2602.8 1833 71.0
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2601.6 1835 70.7
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2601.6 1838 70.4
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2598.2 1838 70.5
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2595.1 1834 70.6
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2593.5 1838 70.4
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2592.8 1833 71.1
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2591.2 1851 70.4
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2590.1 1832 70.9
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2589.7 1838 70.3
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2588.5 1838 70.3
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2585.1 1847 70.3
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2583.5 1819 71.1
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2577.0 1838 69.9
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2577.0 1836 70.4
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2561.6 1935 67.3
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2558.5 1791 71.8
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2558.5 1782 71.9
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2552.7 1833 69.9
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2544.6 1832 68.8
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2541.9 1974 65.6
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2533.8 1834 68.4
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2526.1 1834 68.4
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2525.4 1839 68.4
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2524.6 1832 67.7
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2520.3 1834 68.2
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2520.0 1831 68.3
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2520.0 1835 68.3
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2520.0 1834 67.9
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2518.0 1859 69.3
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2517.3 1817 69.8
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2515.7 1838 68.2
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2501.5 1836 67.6
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2496.1 1831 68.7
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2493.4 1831 67.7
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2493.0 1831 67.7
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2487.2 1775 69.7
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2483.4 1834 67.7
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2482.6 1839 67.6
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2481.4 1843 68.1
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2478.0 1834 67.3
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2477.2 1835 67.8
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2475.7 1835 68.6
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2473.4 1914 65.0
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2473.0 1835 67.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2473.0 1834 68.0
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2473.0 1829 67.1
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2471.8 1835 67.4
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2469.5 1834 67.4
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2469.5 1835 67.4
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2469.5 1834 67.4
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2467.6 1831 67.7
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2464.5 1832 67.1
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2462.6 1835 67.1
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2460.6 1778 68.7
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2459.9 1834 67.1
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2459.5 1832 67.1
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2456.0 1836 67.3
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2443.7 1831 67.0
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2443.3 1831 66.6
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2439.1 1833 66.7
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2438.3 1831 67.3
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2427.5 1835 65.9
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2412.9 1816 66.6
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2396.3 1825 66.0
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2396.3 1860 65.5
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2392.8 1910 64.1
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2390.9 1690 71.4
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2368.6 1830 65.7
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2365.9 1828 65.2
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2360.5 1810 66.2
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2337.8 1834 64.5
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2332.0 1869 63.2
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2303.1 1641 70.7
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2295.4 1961 60.8
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2280.0 1829 64.0
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2255.7 1841 61.8
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2253.4 1916 61.3
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2245.3 1836 61.7
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2221.4 1588 71.5
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2190.6 1665 67.0
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2119.0 1828 58.4
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2077.8 1532 66.9
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2063.1 1439 69.7
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2059.3 1678 62.2
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2041.2 1743 61.6
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1755.3 1462 61.6
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1697.6 1268 68.4
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1696.0 1146 71.6
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1640.9 1833 49.8
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1402.5 1866 41.7
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1388.6 1876 42.1
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1386.3 1942 40.4
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1334.7 944 68.4
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1272.7 1889 38.7
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1219.5 1848 39.0
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1196.4 1871 37.2
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1156.4 1846 36.3
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1140.2 878 66.6
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.0e-308 1064.3 1862 35.0
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.1e-293 1013.4 713 69.4
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 3.9e-287 992.6 945 57.7
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 5.6e-270 935.6 1990 32.1
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 9.0e-252 875.2 1166 46.3
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.6e-251 873.6 691 61.1
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 6.3e-189 666.4 520 66.3
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.7e-163 581.3 623 56.5
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.3e-133 482.6 457 52.5
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 4.2e-132 477.6 637 46.3
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 3.0e-122 444.9 1874 24.1
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.2e-117 428.7 467 47.8
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.9e-108 399.1 355 60.0
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 9.7e-105 386.7 319 59.9
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 4.7e-99 367.9 250 76.8
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 1.8e-98 365.9 310 61.3
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 8.8e-98 363.6 301 59.8
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 7.4e-97 360.5 220 70.9
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.2e-81 310.1 359 51.8
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 1.7e-77 296.2 1697 23.4
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 6.3e-72 277.7 226 56.6
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 3.3e-68 265.4 340 47.6
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 7.0e-63 247.7 166 65.7
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.0e-37 164.1 139 65.5
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 1.5e-36 160.2 98 81.6
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 7.6e-33 147.9 658 23.7
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 6.4e-32 144.8 210 42.4
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 5.1e-21 108.6 93 64.5
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 4.3e-20 105.5 75 61.3
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.6e-19 103.6 73 72.6
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 2.1e-19 103.2 74 60.8
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 2.8e-19 102.8 121 50.4
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.4e-18 100.5 823 19.0
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 1.4e-18 100.5 65 76.9
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 2.6e-17 96.3 105 52.4
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 2.6e-17 96.3 71 64.8
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 3.4e-17 95.9 75 65.3
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 1.1e-10 74.3 45 80.0
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.1e-10 74.3 71 43.7
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 2.4e-10 73.2 78 52.6
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 2.4e-10 73.2 96 38.5
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 3.8e-08 65.9 61 44.3


User provided reference genes

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