Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 0.0e+00 1792.7 972 100.0
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 0.0e+00 1657.5 981 92.0
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 1.9e-304 1049.3 1056 61.8
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 5.6e-269 931.4 1025 58.1
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 5.7e-205 718.8 991 49.5
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 1.1e-134 485.3 1038 40.8
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.5e-130 470.3 1037 40.3
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.6e-130 469.9 1034 40.0
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.4e-126 457.6 1020 39.4
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 7.7e-125 452.6 1014 39.3
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 2.3e-121 441.0 1007 38.2
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 5.1e-121 439.9 971 38.2
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 5.3e-118 429.9 997 38.6
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.2e-116 424.5 1054 37.4
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.5e-115 421.0 1016 37.6
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 5.5e-115 419.9 1042 38.6
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 1.2e-114 418.7 1031 38.2
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.6e-114 418.3 1023 37.0
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.8e-113 414.8 1016 36.9
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 2.3e-113 414.5 1003 37.4
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 3.9e-113 413.7 1044 36.9
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 5.1e-113 413.3 1006 38.9
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 6.7e-113 412.9 1009 37.5
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.7e-113 412.9 1019 37.4
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 8.8e-113 412.5 1006 37.5
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 9.7e-112 409.1 1022 36.0
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 8.2e-111 406.0 1019 36.9
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 1.8e-110 404.8 1024 37.8
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 3.1e-110 404.1 1132 35.6
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 7.7e-109 399.4 1011 36.3
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 7.7e-109 399.4 1038 35.8
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.3e-108 398.7 1011 36.5
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 2.9e-108 397.5 1008 35.9
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 2.9e-108 397.5 948 36.6
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 1.5e-107 395.2 1011 37.9
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 2.5e-107 394.4 1015 36.2
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 2.7e-106 391.0 1037 37.4
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 3.6e-106 390.6 1002 37.0
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 3.0e-105 387.5 1025 36.1
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 4.0e-105 387.1 1002 38.7
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 2.0e-104 384.8 951 35.6
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 3.3e-104 384.0 1026 36.2
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 1.7e-103 381.7 1027 36.0
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.2e-101 375.6 1019 36.5
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 1.6e-101 375.2 946 35.8
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 5.9e-101 373.2 993 37.4
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 7.7e-101 372.9 1014 35.9
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.7e-100 371.7 1015 37.8
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 5.0e-100 370.2 1011 35.6
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 8.5e-100 369.4 1016 35.9
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 1.5e-99 368.6 1038 36.9
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 1.5e-99 368.6 1022 33.1
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 1.4e-97 362.1 1023 35.4
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 1.8e-97 361.7 1007 36.9
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 7.5e-96 356.3 1019 34.2
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 1.3e-95 355.5 718 42.5
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 1.7e-95 355.1 1011 33.4
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 9.1e-94 349.4 1047 35.3
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 9.1e-94 349.4 1021 35.7
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 3.5e-93 347.4 1009 35.9
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 4.5e-93 347.1 895 38.2
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.0e-92 345.9 823 39.4
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 3.8e-92 344.0 975 36.0
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 5.0e-92 343.6 972 37.7
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 1.5e-91 342.0 1001 33.9
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 7.2e-91 339.7 997 34.5
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 4.7e-90 337.0 943 35.0
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.4e-89 335.5 1059 33.7
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 5.2e-89 333.6 1047 33.7
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 3.4e-88 330.9 872 35.4
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 3.7e-87 327.4 936 34.7
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 6.3e-87 326.6 993 34.9
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 8.3e-87 326.2 1007 33.6
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.8e-86 325.1 949 35.8
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 5.9e-85 320.1 1013 33.3
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 5.9e-85 320.1 1015 35.0
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 2.9e-84 317.8 828 36.6
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 1.1e-83 315.8 899 35.9
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.1e-83 315.8 864 34.7
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 1.5e-83 315.5 978 32.4
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 1.9e-83 315.1 922 35.1
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 6.1e-82 310.1 1002 35.4
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 2.6e-80 304.7 916 34.7
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 9.2e-78 296.2 1107 33.3
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.6e-77 295.4 1012 33.0
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 5.9e-77 293.5 772 36.1
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 1.3e-76 292.4 997 32.0
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 2.3e-76 291.6 1014 33.0
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 3.9e-76 290.8 1033 32.9
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 3.9e-76 290.8 960 33.9
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 6.6e-76 290.0 1033 32.1
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.1e-75 289.3 1007 32.4
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 1.9e-75 288.5 1001 31.5
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 2.5e-75 288.1 1019 32.8
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 5.6e-75 287.0 844 34.5
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 7.3e-75 286.6 913 32.7
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 3.1e-73 281.2 1122 29.3
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 5.8e-72 276.9 1002 33.8
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.3e-68 265.8 1051 32.2
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 3.9e-68 264.2 882 32.8
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 3.3e-67 261.2 987 32.2
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 2.0e-64 251.9 964 32.2
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 2.6e-64 251.5 1074 29.7
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 5.8e-64 250.4 956 32.0
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 7.5e-64 250.0 923 31.7
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 1.9e-62 245.4 824 31.1
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 4.0e-57 227.6 818 30.9
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 3.2e-54 218.0 984 30.7
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.1e-51 209.5 970 28.6
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 1.2e-45 189.5 153 67.3
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 9.3e-38 163.3 231 48.1
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 5.6e-35 154.1 401 34.9
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 8.1e-34 150.2 390 34.9
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 8.1e-34 150.2 136 60.3
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 1.1e-27 129.8 156 50.0
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 9.6e-27 126.7 307 35.5
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.8e-26 125.2 1109 26.1
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 4.2e-22 111.3 255 36.5
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.2e-21 109.8 101 65.3
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 4.6e-21 107.8 161 44.1
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 3.0e-20 105.1 98 63.3
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 3.3e-19 101.7 471 28.2
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 3.7e-18 98.2 73 63.0
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 3.4e-16 91.7 213 37.6
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 6.5e-15 87.4 128 46.1
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.5e-14 85.5 125 47.2
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 1.6e-13 82.8 60 73.3
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.1e-13 82.4 289 34.9
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 7.9e-13 80.5 60 73.3
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 4.1e-09 68.2 187 30.5


User provided reference genes

Program Settings