Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.9e-136 486.9 237 100.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.9e-108 394.0 213 90.1
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 7.4e-82 307.8 280 56.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.7e-81 306.6 220 72.7
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.0e-79 299.7 209 68.4
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.5e-69 266.2 210 62.4
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.5e-69 266.2 211 62.6
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 9.4e-69 264.2 212 60.8
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.2e-68 263.8 211 61.6
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 2.1e-68 263.1 215 58.6
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.7e-68 261.9 210 59.0
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 8.0e-68 261.2 212 59.9
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.0e-67 260.8 210 61.4
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.4e-67 260.4 210 59.0
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.4e-67 260.4 211 61.1
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 2.3e-67 259.6 210 58.6
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 2.3e-67 259.6 215 59.5
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 4.0e-67 258.8 212 60.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 4.0e-67 258.8 211 60.2
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 5.2e-67 258.5 203 60.1
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 6.8e-67 258.1 210 61.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 6.8e-67 258.1 211 61.1
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.2e-66 257.3 202 59.9
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 9.7e-66 254.2 209 60.3
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.3e-65 253.8 210 58.1
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.3e-65 253.8 210 57.6
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.7e-65 253.4 220 57.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.7e-65 253.4 210 60.5
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.7e-65 253.4 214 58.4
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.2e-65 253.1 234 55.6
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 3.7e-65 252.3 211 59.7
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 6.3e-65 251.5 214 57.9
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 6.3e-65 251.5 210 57.1
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.1e-64 250.8 214 57.5
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.4e-64 250.4 209 56.9
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.4e-64 250.4 202 60.4
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.4e-64 250.4 217 59.0
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 2.4e-64 249.6 216 59.3
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 3.1e-64 249.2 209 57.4
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 3.1e-64 249.2 211 59.7
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.1e-64 249.2 211 58.8
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.1e-64 248.8 189 64.0
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.1e-64 248.8 211 58.3
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.1e-64 248.8 211 58.3
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 4.1e-64 248.8 211 57.3
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 4.1e-64 248.8 218 57.3
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.3e-64 248.4 210 56.7
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 5.3e-64 248.4 210 56.7
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 5.3e-64 248.4 256 51.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.3e-64 248.4 209 59.8
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 5.3e-64 248.4 209 59.8
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 7.0e-64 248.1 212 58.0
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 7.0e-64 248.1 211 55.9
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.1e-64 247.7 211 58.3
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 9.1e-64 247.7 233 52.8
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 1.2e-63 247.3 210 55.7
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-63 247.3 211 60.7
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.6e-63 246.9 211 57.8
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.6e-63 246.9 210 55.7
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 2.0e-63 246.5 211 57.8
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.0e-63 246.5 211 56.9
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.5e-63 245.7 209 56.5
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.5e-63 245.7 231 52.8
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 4.5e-63 245.4 209 58.9
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-63 245.4 211 57.8
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-63 245.4 211 57.8
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 4.5e-63 245.4 211 57.8
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.9e-63 245.0 211 59.2
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 5.9e-63 245.0 216 57.4
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 7.7e-63 244.6 209 56.0
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 7.7e-63 244.6 216 57.9
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 7.7e-63 244.6 215 57.2
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.0e-62 244.2 210 56.7
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.3e-62 243.8 209 56.0
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.3e-62 243.8 211 55.9
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.2e-62 243.0 213 55.9
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.2e-62 243.0 216 56.9
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.2e-62 243.0 209 55.5
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.9e-62 242.7 193 61.7
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 5.0e-62 241.9 216 56.5
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 5.0e-62 241.9 193 59.6
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 5.0e-62 241.9 193 61.7
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 6.5e-62 241.5 209 55.0
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 6.5e-62 241.5 193 61.7
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.1e-61 240.7 209 54.5
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.1e-61 240.7 209 55.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.1e-61 240.7 214 55.6
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.5e-61 240.4 203 56.2
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.9e-61 240.0 211 55.5
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 3.2e-61 239.2 214 55.1
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 3.2e-61 239.2 209 53.6
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.2e-61 239.2 209 57.9
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.2e-61 239.2 211 55.9
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.2e-61 238.8 247 51.4
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-60 237.3 225 54.2
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-60 237.3 225 54.2
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 6.1e-60 235.0 210 55.2
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.0e-59 234.2 215 55.3
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.0e-59 234.2 203 56.7
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.4e-59 233.8 238 51.3
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.3e-59 233.0 204 58.8
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.0e-59 232.6 203 56.7
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.5e-58 230.3 193 58.0
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.5e-58 230.3 240 50.8
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.4e-58 228.8 210 57.1
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 9.8e-58 227.6 201 51.7
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.3e-57 227.3 201 55.2
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.3e-57 227.3 201 55.2
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 2.8e-57 226.1 196 56.1
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.7e-57 225.7 210 56.2
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 4.5e-55 218.8 211 52.6
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 5.9e-55 218.4 221 50.7
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 5.0e-54 215.3 179 58.7
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.2e-52 210.7 193 52.8
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.8e-51 206.8 179 57.0
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.3e-51 206.5 216 50.0
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 4.4e-50 202.2 216 50.5
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.3e-49 200.7 164 59.1
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 2.7e-47 193.0 213 48.8
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 2.7e-47 193.0 155 60.0
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 4.5e-47 192.2 209 47.4
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.3e-46 190.7 194 49.5
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.7e-46 190.3 139 64.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.7e-46 190.3 173 58.4
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 8.6e-46 188.0 204 47.1
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.1e-44 183.3 198 47.5
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-43 181.0 211 47.9
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.8e-43 180.3 194 46.9
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.8e-43 180.3 194 46.9
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.3e-43 179.9 150 58.0
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 8.9e-43 177.9 159 56.6
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 9.8e-42 174.5 182 51.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 3.9e-38 162.5 145 57.9
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 6.2e-36 155.2 127 58.3
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.4e-35 154.1 188 39.4
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 8.3e-33 144.8 151 49.0
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 3.0e-30 136.3 202 35.1
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.6e-30 135.2 100 60.0
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 8.6e-30 134.8 198 41.4
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.5e-29 133.3 120 51.7
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 6.2e-28 128.6 139 47.5
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.2e-17 93.6 69 58.0
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.8e-17 92.8 81 53.1
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.9e-16 90.5 72 56.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.2e-15 87.8 102 43.1
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.1e-15 87.0 77 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 2.5e-13 80.1 92 46.7
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 9.6e-13 78.2 53 71.7
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 5.3e-11 72.4 37 81.1
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.9e-09 66.6 52 51.9
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.4e-08 62.4 45 64.4
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 3.5e-07 59.7 47 63.8


User provided reference genes

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