Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.4e-192 674.5 344 100.0
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.0e-185 651.7 344 96.5
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 6.8e-185 650.6 344 96.2
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.5e-131 472.6 344 71.5
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 3.3e-123 445.7 339 65.5
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.1e-122 443.0 339 63.7
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.2e-112 410.6 339 65.5
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.2e-111 406.4 345 60.9
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 4.5e-96 355.5 342 57.0
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.0e-95 354.4 342 56.4
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 8.5e-95 351.3 342 55.6
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.5e-94 350.5 340 54.1
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 3.2e-94 349.4 342 55.3
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.7e-93 346.3 342 54.7
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 3.6e-93 345.9 341 55.7
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 6.7e-92 341.7 340 56.2
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.1e-91 340.9 340 52.9
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.5e-91 340.5 341 54.8
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.3e-90 337.4 341 54.0
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 2.2e-90 336.7 339 51.9
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 2.2e-90 336.7 340 52.6
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 4.8e-90 335.5 339 53.7
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 2.4e-89 333.2 341 54.3
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.3e-89 332.0 339 50.7
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.6e-88 330.5 339 51.6
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.6e-88 330.5 339 51.3
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.3e-87 327.4 339 50.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.7e-87 327.0 340 53.2
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 6.5e-87 325.1 339 51.9
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.1e-86 324.3 339 50.1
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.1e-86 324.3 339 51.3
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.1e-86 324.3 340 51.8
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 2.5e-86 323.2 342 52.0
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.2e-85 320.9 342 52.3
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.2e-85 320.9 339 49.6
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.6e-85 320.5 338 53.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.6e-85 320.5 339 51.0
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 2.1e-85 320.1 341 51.3
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 3.6e-85 319.3 341 50.4
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.6e-85 319.3 337 50.7
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 3.6e-85 319.3 345 51.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.8e-84 317.0 337 51.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.8e-84 317.0 342 51.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.3e-84 316.6 345 49.6
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.3e-84 316.6 338 50.6
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 3.0e-84 316.2 345 49.6
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.2e-84 315.5 344 49.7
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 8.8e-84 314.7 344 50.9
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 8.8e-84 314.7 344 52.0
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.5e-83 313.9 338 50.3
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.5e-83 313.9 338 50.3
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.3e-82 310.8 340 50.9
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.2e-82 310.1 340 50.9
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.2e-82 310.1 339 51.6
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 6.3e-82 308.5 341 49.9
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.1e-81 307.8 344 49.1
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.1e-81 307.8 339 51.0
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.1e-81 305.8 339 49.0
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 7.0e-81 305.1 338 50.6
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.0e-80 303.5 341 49.9
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.7e-80 303.1 339 49.9
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.7e-79 300.4 341 49.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.7e-79 300.4 349 48.4
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.7e-79 300.4 333 50.2
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.9e-79 299.7 343 50.7
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 3.8e-79 299.3 341 50.4
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 6.5e-79 298.5 342 49.4
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.5e-79 298.1 337 49.9
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 8.5e-79 298.1 335 50.4
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 5.5e-78 295.4 346 48.6
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.1e-77 293.5 344 49.1
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 2.1e-77 293.5 367 48.8
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 4.7e-77 292.4 344 48.8
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 4.7e-77 292.4 404 43.1
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 8.0e-77 291.6 348 47.7
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 5.2e-76 288.9 342 48.0
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 5.2e-76 288.9 340 46.8
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 8.8e-76 288.1 343 48.1
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.2e-75 287.7 340 49.4
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 5.7e-75 285.4 340 48.5
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.3e-74 284.3 338 48.8
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 2.2e-74 283.5 342 48.5
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 6.3e-74 282.0 341 48.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 6.3e-74 282.0 281 52.0
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.4e-73 280.8 346 48.0
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.4e-73 280.8 377 44.6
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.4e-73 280.0 343 47.8
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.4e-73 280.0 343 47.8
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.4e-73 280.0 343 47.8
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 4.1e-73 279.3 279 52.0
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 9.2e-73 278.1 341 45.7
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.0e-71 274.6 343 46.9
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.3e-71 274.2 340 48.5
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.7e-71 273.9 286 49.3
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 8.6e-71 271.6 342 45.9
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 8.6e-71 271.6 342 45.9
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 8.6e-71 271.6 342 45.9
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 5.6e-70 268.9 343 45.5
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 5.6e-70 268.9 348 44.8
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 9.5e-70 268.1 345 45.8
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 8.0e-69 265.0 335 47.5
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 4.0e-68 262.7 262 55.7
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 5.2e-68 262.3 341 45.5
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 5.2e-68 262.3 337 46.0
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 8.9e-68 261.5 340 44.1
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 8.9e-68 261.5 335 47.2
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-67 261.2 342 46.8
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 2.0e-67 260.4 346 43.6
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 2.6e-67 260.0 362 43.1
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 4.4e-67 259.2 339 46.6
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 9.8e-67 258.1 282 50.0
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 2.2e-66 256.9 342 46.5
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.9e-66 256.5 385 41.6
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.4e-65 254.2 340 43.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.4e-65 253.4 339 44.5
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.2e-64 251.1 219 58.9
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 2.7e-64 250.0 342 46.8
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 4.6e-64 249.2 339 45.4
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 7.8e-64 248.4 340 44.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.0e-63 248.1 348 44.5
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.3e-63 247.7 342 42.4
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.7e-63 247.3 321 47.0
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.3e-63 246.9 347 44.4
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 3.3e-62 243.0 348 43.7
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.2e-61 241.1 348 43.4
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.7e-61 239.2 260 53.1
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.1e-60 236.5 341 43.4
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 9.8e-59 231.5 377 40.8
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.3e-58 231.1 245 50.2
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 8.3e-58 228.4 288 45.5
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.4e-57 227.6 344 40.7
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 5.4e-57 225.7 329 42.6
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.1e-53 213.8 338 38.2
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.1e-52 209.9 328 39.6
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 4.1e-49 199.5 342 42.7
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 5.4e-49 199.1 300 40.3
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.0e-48 195.7 341 41.9
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 3.0e-47 193.4 242 44.6
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.0e-47 193.4 220 52.7
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.2e-45 185.7 204 50.5
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 5.2e-44 182.6 319 41.7
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.8e-44 182.2 204 50.0
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 3.4e-43 179.9 254 41.7
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 4.4e-43 179.5 342 37.1
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 5.8e-43 179.1 186 53.2
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.2e-42 177.2 204 48.5
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 7.1e-41 172.2 163 52.8
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 6.0e-40 169.1 162 53.7
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.0e-39 168.3 323 37.2
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.2e-37 161.4 343 36.2
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-36 158.3 172 50.6
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 4.6e-32 142.9 164 52.4
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.6e-29 133.3 147 46.3
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.1e-28 131.7 208 44.2
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 3.4e-27 126.7 215 38.6
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.4e-26 122.1 127 48.0
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.2e-25 120.2 154 47.4
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 5.4e-25 119.4 133 47.4
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.5e-22 111.3 148 45.3
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.8e-21 106.3 135 44.4
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 7.6e-19 99.0 222 34.7
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 8.4e-18 95.5 134 40.3
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 6.0e-16 89.4 103 42.7
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 6.7e-15 85.9 102 45.1
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.5e-11 73.2 91 41.8
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.4e-09 68.2 61 52.5
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.9e-09 67.8 69 52.2
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.1e-08 64.3 62 46.8
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.0e-07 62.0 318 23.9
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 6.7e-07 59.3 240 28.8


User provided reference genes

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