Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 2.0e-194 682.2 326 100.0
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 2.9e-193 678.3 326 99.4
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 7.9e-183 643.7 326 93.6
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 4.9e-169 597.8 320 87.2
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-168 596.7 329 85.1
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 4.2e-168 594.7 329 84.5
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 2.7e-167 592.0 325 84.9
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.7e-167 592.0 325 84.9
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.5e-167 591.7 329 84.8
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 3.5e-167 591.7 325 84.9
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.8e-166 589.3 324 84.9
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 3.9e-166 588.2 325 84.9
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 5.1e-166 587.8 329 84.5
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 7.4e-165 583.9 326 84.7
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 2.1e-164 582.4 324 84.3
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 4.8e-164 581.3 326 82.8
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.1e-163 580.1 330 82.7
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 1.1e-163 580.1 325 84.0
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.1e-163 580.1 319 84.6
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 1.4e-163 579.7 324 83.6
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 4.1e-163 578.2 325 84.3
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 6.9e-163 577.4 304 89.1
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.5e-162 576.2 326 83.4
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.0e-162 575.9 325 82.5
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.0e-162 575.9 320 82.8
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 3.4e-162 575.1 315 84.8
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 4.5e-162 574.7 323 83.0
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 4.5e-162 574.7 326 83.1
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.6e-162 573.9 328 84.5
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.7e-161 572.8 314 85.0
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.7e-161 572.8 313 84.7
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.9e-161 572.0 322 84.8
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.9e-161 572.0 328 84.5
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 3.8e-161 571.6 326 81.9
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 5.0e-161 571.2 329 81.8
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.5e-161 570.9 315 84.8
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 8.5e-161 570.5 324 82.1
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 8.5e-161 570.5 327 83.2
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.4e-160 569.7 319 83.1
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.9e-160 569.3 319 83.7
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.9e-160 569.3 322 82.6
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 2.5e-160 568.9 308 85.7
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 2.5e-160 568.9 323 81.4
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 3.2e-160 568.5 326 81.3
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 3.2e-160 568.5 324 82.4
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 4.2e-160 568.2 323 81.4
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 4.2e-160 568.2 314 84.1
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 7.2e-160 567.4 315 83.5
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 7.2e-160 567.4 313 84.0
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 7.2e-160 567.4 317 83.0
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 7.2e-160 567.4 329 81.2
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 9.3e-160 567.0 324 82.1
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 9.3e-160 567.0 319 82.1
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 9.3e-160 567.0 319 82.1
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 9.3e-160 567.0 318 83.3
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.6e-159 566.2 314 82.2
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 1.6e-159 566.2 327 81.7
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.6e-159 566.2 323 82.4
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 2.7e-159 565.5 319 82.4
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 4.6e-159 564.7 313 83.4
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 6.1e-159 564.3 331 81.9
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 6.1e-159 564.3 310 83.5
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 7.9e-159 563.9 319 81.8
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.0e-158 563.5 321 81.3
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.0e-158 563.5 321 81.3
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.8e-158 562.8 318 80.8
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 1.8e-158 562.8 314 83.1
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 1.8e-158 562.8 314 83.1
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 3.0e-158 562.0 327 82.0
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 3.0e-158 562.0 321 81.9
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 5.1e-158 561.2 318 80.5
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 5.1e-158 561.2 326 81.0
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 6.7e-158 560.8 324 80.6
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 8.7e-158 560.5 324 80.6
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 8.7e-158 560.5 323 81.1
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 1.1e-157 560.1 311 83.0
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.5e-157 559.7 320 81.6
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 1.5e-157 559.7 323 80.2
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.9e-157 559.3 323 81.1
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 2.5e-157 558.9 314 80.9
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 4.3e-157 558.1 320 80.6
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 5.7e-157 557.8 324 79.9
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 5.7e-157 557.8 324 79.9
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 9.7e-157 557.0 324 79.6
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 9.7e-157 557.0 325 79.7
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.6e-156 556.2 314 82.8
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 4.8e-156 554.7 322 80.1
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 4.8e-156 554.7 319 81.8
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 6.3e-156 554.3 332 79.2
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 6.3e-156 554.3 317 81.7
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 1.1e-155 553.5 382 70.9
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.4e-155 553.1 325 80.3
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 2.4e-155 552.4 324 79.3
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 2.4e-155 552.4 324 79.3
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.2e-154 550.1 329 79.3
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.2e-154 550.1 323 78.6
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.5e-154 549.7 304 85.9
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 1.7e-153 546.2 323 78.0
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 8.5e-153 543.9 314 80.6
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 1.4e-152 543.1 321 79.8
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 1.6e-151 539.7 324 76.9
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.8e-150 536.2 323 77.4
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 5.1e-150 534.6 315 80.0
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 1.5e-149 533.1 315 79.7
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.3e-148 530.0 336 73.8
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 4.7e-143 511.5 278 84.5
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.4e-142 510.0 309 76.1
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 5.7e-141 504.6 321 74.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 7.0e-139 497.7 295 76.3
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 7.0e-139 497.7 308 74.0
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.0e-137 491.5 305 77.7
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 6.1e-135 484.6 269 82.9
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 7.5e-133 477.6 314 69.4
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 2.7e-130 469.2 268 81.0
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 7.2e-128 461.1 338 67.5
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 1.4e-126 456.8 312 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 2.3e-126 456.1 309 68.0
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 4.8e-124 448.4 309 66.7
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 4.8e-124 448.4 309 66.7
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 2.8e-119 432.6 250 78.8
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 5.4e-115 418.3 313 62.0
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.2e-106 390.6 231 81.0
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 1.4e-102 377.1 323 56.7
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 4.3e-96 355.5 246 67.9
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 3.4e-93 345.9 214 76.2
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 2.5e-88 329.7 314 51.0
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.9e-80 303.5 344 43.3
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 3.3e-72 276.2 360 39.7
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 4.6e-50 202.6 123 72.4
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.1e-30 138.3 82 81.7
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 1.3e-28 131.3 89 74.2
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.7e-21 105.5 75 70.7
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 2.5e-19 100.5 66 71.2
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.1e-14 85.1 48 75.0
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 2.0e-13 80.9 47 74.5
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 7.7e-13 79.0 58 63.8
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 1.1e-11 75.1 52 71.2
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.8e-09 67.8 43 62.8


User provided reference genes

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