Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 0.0e+00 1496.5 752 100.0
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 0.0e+00 1389.0 718 96.8
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 0.0e+00 1168.3 752 79.7
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 9.9e-306 1053.1 781 68.2
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 1.2e-298 1029.6 775 66.2
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 5.8e-298 1027.3 776 66.6
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 7.6e-298 1026.9 776 66.5
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.3e-297 1026.2 776 66.5
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 1.2e-295 1019.6 776 66.1
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 3.1e-291 1005.0 777 65.3
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 1.3e-289 999.6 777 64.6
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 1.7e-289 999.2 776 64.2
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 4.2e-288 994.6 776 64.6
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 7.1e-288 993.8 776 64.2
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 9.3e-288 993.4 773 64.8
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 2.1e-287 992.3 774 65.0
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 2.1e-287 992.3 775 64.6
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 2.3e-286 988.8 778 64.7
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 1.3e-284 983.0 774 62.5
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 1.6e-284 982.6 749 65.0
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 8.2e-284 980.3 794 63.6
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 3.4e-282 974.9 778 62.1
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.7e-281 972.6 776 63.1
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 2.2e-281 972.2 779 61.9
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 3.8e-281 971.5 777 61.1
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 6.5e-281 970.7 781 63.1
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 1.4e-280 969.5 864 58.6
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 3.2e-280 968.4 774 62.8
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 1.2e-279 966.5 776 62.2
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.0e-278 963.4 777 60.7
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.8e-278 962.6 778 62.5
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.8e-278 962.6 791 62.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 2.3e-278 962.2 778 63.4
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 1.5e-277 959.5 788 60.0
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 5.7e-277 957.6 773 61.7
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 8.2e-276 953.7 776 62.9
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 8.2e-276 953.7 774 61.4
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 1.4e-275 953.0 775 62.6
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 1.4e-275 953.0 776 62.1
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 4.1e-275 951.4 776 62.1
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.6e-274 948.7 776 62.6
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 2.6e-274 948.7 777 60.9
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 4.5e-274 948.0 777 61.6
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 5.9e-274 947.6 749 62.5
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 2.2e-273 945.7 802 58.6
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 8.5e-273 943.7 776 62.2
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.4e-272 943.0 783 61.7
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 3.2e-272 941.8 776 60.6
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 4.2e-272 941.4 776 60.7
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.2e-271 939.9 776 60.6
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.6e-271 939.5 750 63.7
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 4.6e-271 937.9 765 62.0
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.0e-270 936.8 782 60.5
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.8e-270 936.0 777 60.4
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.3e-270 935.6 774 62.0
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 3.9e-270 934.9 780 61.0
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 8.8e-270 933.7 777 60.1
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 3.3e-269 931.8 776 59.7
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 3.3e-269 931.8 777 59.6
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 5.7e-269 931.0 777 60.2
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.3e-268 929.9 777 60.1
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 2.2e-268 929.1 786 59.5
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 2.2e-268 929.1 776 59.9
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 8.2e-268 927.2 776 59.5
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 2.6e-266 922.2 774 61.2
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 4.5e-266 921.4 879 54.8
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 7.7e-266 920.6 778 59.8
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 7.7e-266 920.6 780 60.6
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 8.5e-265 917.1 777 58.8
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.2e-263 913.3 783 60.4
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 6.1e-263 911.0 876 55.3
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 3.9e-262 908.3 773 60.3
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 4.4e-261 904.8 836 56.7
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 1.3e-260 903.3 784 60.6
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 2.2e-260 902.5 774 59.6
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.7e-260 901.7 774 59.4
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.8e-259 899.4 773 59.5
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 2.4e-259 899.0 803 57.7
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 4.2e-256 888.3 777 58.8
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 4.1e-251 871.7 734 60.4
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 4.0e-246 855.1 776 56.6
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 2.6e-245 852.4 742 59.2
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 8.3e-244 847.4 783 56.2
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 9.5e-240 833.9 787 55.0
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 6.1e-239 831.2 786 54.8
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.0e-233 813.9 721 58.5
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.5e-208 730.3 769 49.5
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.8e-190 670.2 497 66.6
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 7.9e-186 654.8 538 60.4
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 3.0e-185 652.9 530 64.0
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 4.0e-182 642.5 748 47.9
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.5e-170 602.8 479 65.1
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-163 581.3 430 66.5
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 5.1e-161 572.4 624 51.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 3.6e-154 549.7 794 40.1
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.6e-144 516.9 796 39.1
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.2e-141 508.1 391 67.3
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 1.4e-134 484.6 514 50.8
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.7e-119 434.5 404 56.9
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.3e-119 432.6 506 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 1.1e-107 395.2 745 34.0
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 2.1e-106 391.0 419 51.8
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.7e-100 371.3 837 30.9
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 3.6e-98 363.6 424 48.6
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 7.1e-86 322.8 356 49.7
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 5.1e-84 316.6 190 73.2
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 9.3e-70 269.2 394 38.6
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-69 268.5 231 61.0
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.0e-68 265.8 256 55.1
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 6.7e-68 263.1 264 49.6
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.3e-66 258.8 224 58.0
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.1e-54 219.2 745 26.3
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 3.7e-42 177.6 171 59.1
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 9.4e-38 162.9 465 27.1
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.4e-36 159.1 109 65.1
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 3.0e-36 157.9 89 92.1
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 3.0e-36 157.9 88 93.2
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 3.0e-36 157.9 86 88.4
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.2e-32 146.0 323 32.8
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 3.5e-32 144.4 167 47.3
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 7.7e-32 143.3 255 37.6
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 3.8e-31 141.0 227 38.3
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.2e-29 136.0 116 56.0
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 8.0e-29 133.3 497 24.5
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 8.0e-29 133.3 72 81.9
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.5e-27 129.0 109 56.9
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.4e-27 126.7 81 70.4
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.3e-26 123.6 81 70.4
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 4.5e-24 117.5 510 22.5
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.5e-24 117.5 61 86.9
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.2e-23 115.2 81 65.4
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 2.9e-23 114.8 61 78.7
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.0e-23 114.0 95 55.8
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.5e-22 112.5 76 67.1
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 2.5e-22 111.7 61 83.6
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.2e-21 109.4 57 96.5
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-20 105.9 111 52.3
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.2e-18 98.6 61 77.0
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.3e-18 97.1 105 48.6
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 5.4e-17 94.0 115 47.0
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 7.7e-16 90.1 78 53.8
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.0e-15 89.7 56 69.6
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.3e-15 89.4 54 72.2
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 1.9e-14 85.5 80 50.0
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 8.0e-13 80.1 62 59.7
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 8.0e-13 80.1 62 59.7
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.0e-12 79.7 81 54.3
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.4e-11 74.3 64 53.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.2e-10 72.0 58 56.9
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.3e-10 70.1 58 55.2
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.0e-09 67.0 63 52.4
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.0e-08 65.5 81 45.7
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 5.9e-08 63.9 74 45.9
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 2.9e-07 61.6 31 83.9
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 5.0e-07 60.8 82 32.9


User provided reference genes

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