Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.0e-210 734.9 373 100.0
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.9e-181 638.6 373 89.3
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.6e-131 473.4 370 71.4
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 6.8e-122 441.4 369 67.5
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 7.5e-121 438.0 371 65.8
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 8.3e-120 434.5 371 64.7
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 5.4e-119 431.8 317 70.3
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 2.7e-118 429.5 347 66.3
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 1.0e-117 427.6 365 65.2
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 2.9e-117 426.0 316 69.9
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 2.5e-116 422.9 319 69.0
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 2.5e-116 422.9 320 70.3
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 4.3e-116 422.2 352 65.3
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 5.6e-116 421.8 316 70.3
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.2e-115 420.6 368 63.6
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 2.1e-115 419.9 352 64.8
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.8e-115 419.5 352 65.6
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 6.1e-115 418.3 335 67.2
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.4e-114 417.2 351 64.7
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 6.8e-114 414.8 319 68.7
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 6.8e-114 414.8 319 69.6
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.2e-113 414.1 347 64.0
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 2.0e-113 413.3 314 69.1
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.6e-113 412.9 337 66.2
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 4.4e-113 412.1 314 70.1
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.7e-113 411.8 335 66.9
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 5.7e-113 411.8 318 68.2
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 9.8e-113 411.0 376 62.2
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 2.2e-112 409.8 380 61.6
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 2.9e-112 409.5 319 67.7
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 4.9e-112 408.7 322 67.7
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 8.3e-112 407.9 364 61.3
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 2.4e-111 406.4 363 60.9
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 3.2e-111 406.0 318 67.9
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.6e-110 403.7 319 66.8
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.0e-110 403.3 316 65.8
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 2.7e-110 402.9 316 67.1
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 3.5e-110 402.5 385 59.2
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 4.6e-110 402.1 319 66.5
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 7.8e-110 401.4 373 60.3
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.7e-109 400.2 364 60.2
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 3.0e-109 399.4 352 63.1
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.6e-109 398.3 352 62.5
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.1e-108 397.5 319 65.8
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 4.3e-108 395.6 333 63.7
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.2e-107 394.0 372 60.8
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 2.1e-107 393.3 370 59.7
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.1e-106 391.0 328 63.4
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 5.2e-106 388.7 372 59.1
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-105 387.5 370 57.8
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 2.0e-105 386.7 327 63.0
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 5.8e-105 385.2 311 64.3
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 7.5e-105 384.8 372 58.3
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 9.8e-105 384.4 370 57.3
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.3e-104 384.0 373 60.9
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 3.7e-104 382.5 366 59.6
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 8.3e-104 381.3 369 57.5
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.1e-103 380.9 315 62.5
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.4e-103 380.6 316 61.7
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.9e-103 380.2 343 63.0
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 3.2e-103 379.4 315 62.5
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 4.1e-103 379.0 314 63.7
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 5.4e-103 378.6 373 56.8
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 9.2e-103 377.9 369 56.6
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 9.2e-103 377.9 319 63.0
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.6e-102 377.1 366 59.3
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 4.6e-102 375.6 296 65.5
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 6.0e-102 375.2 310 64.8
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 7.8e-102 374.8 374 55.3
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.7e-101 373.6 369 55.6
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 3.3e-100 369.4 364 57.4
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 2.1e-99 366.7 356 59.8
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.8e-98 363.6 321 63.2
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 1.5e-97 360.5 321 62.0
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 2.0e-97 360.1 315 59.7
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.6e-94 350.5 315 61.9
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 5.6e-92 342.0 288 61.8
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 9.5e-92 341.3 314 59.9
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.8e-91 339.7 285 62.8
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.4e-88 328.6 355 54.4
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 4.1e-87 325.9 320 56.6
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.7e-85 318.2 316 57.0
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 4.3e-84 315.8 341 55.1
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.7e-80 303.9 376 51.6
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.1e-79 301.2 268 62.7
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 3.2e-79 299.7 378 48.1
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 7.1e-79 298.5 285 60.4
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.8e-78 295.0 319 53.9
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.3e-77 294.3 319 54.2
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.7e-77 293.9 319 53.9
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 8.7e-77 291.6 315 49.8
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.9e-76 290.4 223 68.2
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 2.8e-75 286.6 321 48.3
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 3.6e-75 286.2 227 65.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 2.2e-72 276.9 317 52.4
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.7e-69 265.4 369 42.5
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 7.4e-68 261.9 314 45.9
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.8e-67 260.0 309 45.6
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.8e-64 249.6 309 44.3
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.5e-60 237.7 286 49.0
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 3.1e-58 229.9 202 61.4
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 3.2e-55 219.9 192 62.0
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 5.5e-55 219.2 233 52.8
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 7.1e-55 218.8 240 49.6
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.8e-50 204.1 213 54.0
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 3.3e-44 183.3 136 66.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 2.2e-40 170.6 144 62.5
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.6e-38 163.3 140 62.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-32 144.8 212 42.9
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 1.3e-32 144.8 279 33.7
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.0e-28 131.0 104 65.4
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 2.6e-28 130.6 212 41.0
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.7e-27 127.9 214 37.4
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 3.1e-26 123.6 77 79.2
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 4.1e-26 123.2 251 35.9
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 2.0e-25 120.9 299 30.4
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 2.6e-25 120.6 238 35.3
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 2.9e-24 117.1 76 78.9
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.9e-24 117.1 71 74.6
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 3.8e-24 116.7 114 58.8
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-23 114.8 240 34.6
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 2.1e-22 110.9 162 44.4
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 8.8e-21 105.5 269 28.3
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 2.6e-20 104.0 240 34.6
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 3.3e-20 103.6 81 65.4
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 8.2e-19 99.0 59 78.0
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.1e-18 98.6 93 52.7
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 3.2e-15 87.0 128 40.6
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 4.7e-14 83.2 62 64.5
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 6.1e-14 82.8 63 65.1
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 5.2e-13 79.7 173 33.5
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 6.8e-13 79.3 40 90.0
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 5.7e-12 76.3 78 53.8
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 7.5e-12 75.9 42 78.6
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 8.3e-11 72.4 38 84.2
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 2.0e-09 67.8 57 63.2
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 2.9e-08 63.9 142 30.3


User provided reference genes

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