Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 4.8e-264 914.1 499 100.0
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 4.1e-223 778.1 464 92.0
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.4e-178 630.2 513 72.7
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 1.1e-154 550.8 504 63.5
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 2.4e-151 539.7 478 63.0
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 3.0e-149 532.7 475 63.8
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.6e-147 526.9 478 61.5
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 1.5e-145 520.4 431 66.4
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 4.5e-145 518.8 470 63.2
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 1.7e-144 516.9 411 69.3
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.4e-143 513.8 475 61.3
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 1.2e-142 510.8 475 61.1
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 1.2e-142 510.8 476 61.6
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 6.0e-142 508.4 504 59.5
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 6.7e-141 505.0 466 62.0
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 2.5e-140 503.1 479 59.1
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 2.8e-139 499.6 511 58.5
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 8.2e-139 498.0 511 59.1
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 1.1e-138 497.7 517 59.0
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 1.1e-138 497.7 482 60.2
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 1.8e-138 496.9 472 60.4
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 2.4e-138 496.5 472 59.5
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 3.1e-138 496.1 525 57.7
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 4.1e-138 495.7 517 56.9
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 4.1e-138 495.7 515 57.3
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 5.3e-138 495.4 525 57.7
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 6.9e-138 495.0 514 57.4
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 9.0e-138 494.6 508 55.7
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 4.5e-137 492.3 513 58.9
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 1.7e-136 490.3 517 57.4
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 1.7e-136 490.3 412 65.5
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 2.2e-136 490.0 518 56.2
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 2.2e-136 490.0 518 56.4
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 3.8e-136 489.2 480 58.3
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 3.8e-136 489.2 518 56.2
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 6.5e-136 488.4 519 57.8
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 1.4e-135 487.3 515 56.9
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 4.2e-135 485.7 466 60.3
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 4.2e-135 485.7 500 56.8
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 7.1e-135 485.0 401 65.1
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 1.2e-134 484.2 502 57.8
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 1.2e-134 484.2 488 57.4
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.2e-134 484.2 520 56.2
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.2e-134 484.2 508 56.7
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 4.6e-134 482.3 545 54.9
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 4.6e-134 482.3 530 55.8
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 6.1e-134 481.9 469 60.3
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 3.0e-133 479.6 524 55.5
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.1e-132 477.6 468 58.1
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 1.1e-132 477.6 516 57.2
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 4.3e-132 475.7 513 56.9
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.6e-131 473.8 520 54.8
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 2.2e-131 473.4 518 55.0
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 8.2e-131 471.5 518 54.4
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 1.4e-130 470.7 416 62.3
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 5.3e-130 468.8 514 54.9
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 5.3e-130 468.8 465 55.9
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 6.9e-130 468.4 475 57.1
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 4.5e-129 465.7 610 49.7
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 5.0e-128 462.2 511 53.4
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.4e-127 460.7 412 61.7
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 1.9e-127 460.3 448 58.7
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 7.2e-127 458.4 512 54.9
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 7.2e-127 458.4 512 54.9
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 9.4e-127 458.0 427 58.8
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 1.2e-126 457.6 513 54.2
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.2e-126 457.6 486 56.0
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 2.1e-126 456.8 509 55.0
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.7e-126 456.4 412 61.2
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 2.7e-126 456.4 519 54.3
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 3.6e-126 456.1 518 54.6
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 2.3e-125 453.4 502 54.6
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 3.0e-125 453.0 502 54.6
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 3.0e-125 453.0 513 54.2
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.9e-125 452.6 408 62.3
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.9e-125 452.6 408 62.5
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 2.5e-124 449.9 515 54.4
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 4.3e-124 449.1 515 52.8
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 2.8e-123 446.4 532 52.8
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 4.8e-123 445.7 515 51.8
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 6.3e-123 445.3 521 53.2
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 3.1e-122 443.0 466 54.5
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 3.1e-122 443.0 464 53.0
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 4.1e-122 442.6 391 59.6
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 6.9e-122 441.8 526 53.0
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 2.6e-121 439.9 515 51.8
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 4.5e-121 439.1 504 51.0
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 7.7e-121 438.3 466 55.6
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 2.2e-120 436.8 506 53.0
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 1.1e-119 434.5 510 52.9
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 1.2e-118 431.0 514 50.0
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 1.2e-118 431.0 514 50.0
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.2e-118 431.0 401 59.6
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.6e-118 430.6 405 58.8
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 4.7e-118 429.1 515 53.0
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 7.9e-118 428.3 470 54.0
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.0e-117 427.9 384 61.5
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 1.8e-117 427.2 483 52.8
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 3.0e-117 426.4 466 52.4
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 6.7e-117 425.2 546 50.2
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 6.7e-117 425.2 425 55.1
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 7.7e-113 411.8 389 58.1
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.9e-111 407.1 398 58.8
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 4.7e-110 402.5 358 63.1
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 4.0e-109 399.4 427 54.1
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 3.3e-108 396.4 386 57.0
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 5.9e-105 385.6 382 54.7
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 6.3e-99 365.5 382 57.1
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 9.1e-98 361.7 542 44.1
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 8.0e-94 348.6 475 48.6
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 4.0e-93 346.3 402 52.2
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.7e-91 340.9 314 58.3
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 3.5e-89 333.2 369 55.3
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 1.2e-86 324.7 526 40.3
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 1.6e-81 307.8 490 39.0
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 5.6e-79 299.3 468 40.6
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 9.8e-76 288.5 232 65.9
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.3e-75 288.1 276 57.6
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 2.2e-75 287.3 290 53.1
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 3.7e-75 286.6 276 57.2
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 2.8e-70 270.4 266 59.0
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 8.9e-69 265.4 325 50.2
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.1e-66 256.5 378 47.1
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 8.1e-62 242.3 614 33.6
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 1.4e-61 241.5 496 33.9
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 2.2e-59 234.2 305 46.9
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 5.2e-53 213.0 175 64.6
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 7.1e-50 202.6 301 46.5
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 1.5e-47 194.9 465 35.5
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.7e-43 181.4 156 62.8
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 4.6e-41 173.3 157 59.9
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 5.3e-37 159.8 145 62.8
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 1.3e-35 155.2 183 55.2
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.2e-25 122.1 107 62.6
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 6.3e-22 109.8 108 61.1
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 6.3e-22 109.8 108 61.1
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 4.1e-21 107.1 173 43.9
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.5e-20 105.1 189 43.9
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.7e-19 101.7 127 49.6
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 8.7e-16 89.4 92 56.5
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 3.3e-15 87.4 107 49.5
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 7.4e-15 86.3 93 52.7
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.4e-13 81.3 131 39.7
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 9.0e-13 79.3 71 59.2
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.0e-11 75.9 119 44.5
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 1.9e-10 71.6 70 60.0
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 5.5e-10 70.1 75 57.3
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 1.2e-09 68.9 154 40.9
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 4.6e-09 67.0 70 55.7
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 6.1e-09 66.6 154 36.4


User provided reference genes

Program Settings