Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.2e-121 439.9 233 100.0
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.8e-101 372.9 244 83.2
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.1e-65 253.1 245 62.9
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.3e-51 207.2 231 53.7
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.3e-51 207.2 231 53.7
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.9e-50 203.4 227 52.0
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 4.3e-50 202.2 247 53.4
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 7.4e-50 201.4 241 51.5
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.7e-49 199.1 241 52.7
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.1e-48 197.6 241 53.1
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.4e-48 197.2 237 50.2
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 1.8e-48 196.8 247 49.4
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.4e-48 196.4 242 52.5
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 9.0e-48 194.5 246 49.6
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 9.0e-48 194.5 247 49.4
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.5e-47 193.7 241 50.6
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.0e-47 193.4 247 49.0
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.6e-47 193.0 246 50.4
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 3.4e-47 192.6 246 50.8
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.4e-47 192.6 255 49.0
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 7.6e-47 191.4 246 49.6
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.0e-46 191.0 244 51.2
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.3e-46 190.7 240 52.9
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-46 190.3 208 53.4
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 1.7e-46 190.3 235 51.1
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.7e-46 190.3 251 49.8
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.8e-46 189.1 241 51.9
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 3.8e-46 189.1 216 53.7
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.8e-46 189.1 208 52.9
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.8e-46 189.1 208 52.9
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 4.9e-46 188.7 246 49.2
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.9e-46 188.7 254 46.5
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 6.5e-46 188.3 249 49.4
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.4e-46 188.0 248 46.8
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.4e-46 188.0 254 46.9
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.4e-45 187.2 245 47.3
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.9e-45 186.8 204 54.4
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 2.5e-45 186.4 246 47.6
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.5e-45 186.4 252 46.4
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 3.2e-45 186.0 246 48.0
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 4.2e-45 185.7 207 53.1
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 4.2e-45 185.7 249 49.4
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 4.2e-45 185.7 249 49.8
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 5.5e-45 185.3 240 49.6
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 5.5e-45 185.3 247 47.8
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.5e-45 185.3 243 50.6
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.2e-44 184.1 239 49.8
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.2e-44 184.1 246 48.4
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-44 184.1 208 51.4
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.2e-44 184.1 208 51.4
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.6e-44 183.7 242 49.2
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.6e-44 183.7 233 51.1
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.1e-44 183.3 227 51.5
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 2.7e-44 183.0 243 51.0
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 4.6e-44 182.2 240 49.2
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 4.6e-44 182.2 246 46.3
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 7.9e-44 181.4 198 54.5
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 7.9e-44 181.4 207 51.2
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 7.9e-44 181.4 238 48.7
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.0e-43 181.0 249 47.4
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.0e-43 181.0 208 50.0
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-43 180.6 155 65.8
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.3e-43 180.6 232 49.1
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.3e-43 180.6 237 48.1
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.8e-43 180.3 237 49.4
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.3e-43 179.9 240 48.3
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.3e-43 179.9 221 49.8
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.9e-43 179.1 254 48.4
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.1e-43 178.7 247 46.6
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 5.1e-43 178.7 248 46.4
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 6.7e-43 178.3 271 45.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 6.7e-43 178.3 240 49.6
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 8.7e-43 177.9 239 49.0
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 8.7e-43 177.9 230 50.4
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 8.7e-43 177.9 258 48.1
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.1e-42 177.6 206 51.5
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.5e-42 176.4 246 48.4
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.5e-42 176.4 179 55.9
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.3e-42 176.0 228 49.6
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 5.7e-42 175.3 141 67.4
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 9.7e-42 174.5 217 48.4
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.3e-41 174.1 217 49.3
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.2e-41 173.3 239 46.0
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 2.2e-41 173.3 221 48.0
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.8e-41 172.9 238 48.3
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 3.7e-41 172.6 233 48.5
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 4.8e-41 172.2 235 45.5
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 4.8e-41 172.2 239 46.4
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 6.3e-41 171.8 240 48.8
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 6.3e-41 171.8 258 46.5
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 6.3e-41 171.8 202 51.0
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 1.1e-40 171.0 246 43.9
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.4e-40 170.6 236 44.9
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.8e-40 170.2 176 52.8
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.1e-40 169.5 251 43.4
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.1e-40 169.5 217 50.7
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 4.1e-40 169.1 312 40.1
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 5.3e-40 168.7 176 55.1
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 5.3e-40 168.7 210 51.0
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.3e-40 168.7 238 48.3
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.2e-39 167.5 235 48.9
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.4e-39 166.0 213 50.7
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 3.4e-39 166.0 231 48.9
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.5e-39 165.6 168 54.8
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 4.5e-39 165.6 194 51.0
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.0e-38 164.5 164 55.5
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-38 163.7 232 47.4
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 2.2e-38 163.3 244 44.7
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.2e-38 163.3 156 59.0
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 2.9e-38 162.9 244 44.7
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.8e-38 162.5 245 46.1
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 6.5e-38 161.8 240 45.4
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.1e-37 161.0 238 44.5
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.1e-37 161.0 244 45.1
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.9e-37 160.2 247 44.1
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.9e-37 160.2 145 60.0
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 2.5e-37 159.8 189 54.0
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 3.2e-37 159.5 237 47.3
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 5.5e-37 158.7 210 51.4
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 7.2e-37 158.3 154 59.1
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 7.2e-37 158.3 205 48.8
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 2.1e-36 156.8 323 39.0
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 2.7e-36 156.4 242 43.0
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 4.6e-36 155.6 248 43.5
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 6.1e-36 155.2 216 47.2
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 7.9e-36 154.8 102 73.5
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.0e-35 154.5 238 47.5
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.8e-35 153.7 265 38.5
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 3.9e-35 152.5 235 45.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 3.9e-35 152.5 207 48.3
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.9e-35 152.5 114 68.4
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 5.1e-35 152.1 218 47.2
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 5.1e-35 152.1 225 45.8
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 5.1e-35 152.1 205 46.8
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 6.7e-35 151.8 117 66.7
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 8.7e-35 151.4 202 48.0
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.1e-34 151.0 207 47.8
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.9e-34 150.2 221 45.7
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 4.3e-34 149.1 155 56.1
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 9.7e-34 147.9 129 58.9
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 2.2e-33 146.7 206 48.1
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 2.8e-33 146.4 206 47.1
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.8e-33 146.4 106 67.0
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.7e-33 146.0 153 49.7
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 4.8e-33 145.6 100 70.0
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 4.8e-33 145.6 206 47.6
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 4.8e-33 145.6 206 47.6
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.1e-32 142.9 201 46.3
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 6.9e-32 141.7 203 43.3
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 1.3e-30 137.5 198 43.4
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.4e-29 134.0 117 63.2
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 3.9e-27 125.9 83 73.5
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 3.9e-27 125.9 83 73.5
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.5e-26 124.0 207 42.5
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.7e-25 120.6 108 56.5
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 2.6e-23 113.2 81 66.7
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.2e-22 110.2 158 46.8
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 3.9e-19 99.4 170 43.5
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.7e-17 94.0 79 67.1
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.8e-16 90.5 97 53.6
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.8e-16 90.5 158 33.5
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 4.1e-16 89.4 148 44.6
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.1e-12 77.0 240 33.3
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.5e-10 68.6 78 46.2
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.7e-09 67.4 40 77.5
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 2.8e-09 66.6 142 35.2
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 9.1e-08 61.6 43 65.1


User provided reference genes

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