Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 0.0e+00 1399.4 743 100.0
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.1e-296 1023.1 793 73.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.3e-294 1016.1 590 89.2
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.1e-252 875.9 777 63.8
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.9e-216 756.5 808 53.8
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.0e-214 750.7 830 53.1
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 2.0e-213 746.5 804 53.6
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 4.4e-213 745.3 796 53.8
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 7.5e-213 744.6 796 53.1
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.3e-212 743.8 796 54.1
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.1e-211 739.2 794 53.7
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.1e-211 738.8 796 53.5
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.5e-208 729.6 797 52.6
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.2e-208 728.8 795 53.3
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 9.4e-208 727.6 807 52.4
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.7e-207 726.1 759 54.9
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.0e-206 724.2 806 51.6
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 5.2e-206 721.8 782 53.8
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 5.2e-206 721.8 798 52.6
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 7.5e-205 718.0 800 52.8
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 9.8e-205 717.6 804 52.7
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.3e-204 717.2 760 57.6
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.7e-204 716.8 797 51.8
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.2e-204 716.5 800 52.8
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.8e-204 716.1 778 53.0
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 5.4e-203 711.8 836 49.8
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 7.0e-203 711.4 785 52.0
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 2.7e-202 709.5 801 52.1
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.8e-201 705.7 802 52.0
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 6.5e-201 704.9 797 51.6
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.7e-199 698.7 763 52.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.0e-198 697.6 770 57.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.3e-198 696.4 801 51.8
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 3.0e-198 696.0 843 51.1
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 6.8e-198 694.9 745 54.4
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 1.2e-197 694.1 785 52.9
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.2e-197 694.1 781 52.0
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.5e-197 693.7 783 51.9
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 2.0e-197 693.3 806 52.5
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.6e-197 693.0 800 50.4
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 3.4e-197 692.6 797 51.4
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.8e-196 689.5 777 51.5
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 3.7e-196 689.1 760 52.2
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.4e-195 686.4 830 49.2
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 3.1e-195 686.0 796 50.8
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 4.1e-195 685.6 809 49.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 4.1e-195 685.6 841 49.8
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.2e-194 684.1 794 50.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.0e-194 683.3 755 52.1
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 3.5e-194 682.6 826 48.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.5e-194 682.6 803 49.3
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 5.9e-194 681.8 755 51.9
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 2.9e-193 679.5 793 50.4
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 5.0e-193 678.7 827 49.7
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.3e-192 675.6 881 47.9
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 2.8e-191 672.9 830 48.6
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.4e-190 670.6 830 48.3
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 2.3e-190 669.8 788 50.3
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 2.3e-190 669.8 797 50.8
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 3.0e-190 669.5 827 50.1
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.0e-190 669.1 874 47.5
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.4e-189 666.0 807 49.3
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 3.7e-188 662.5 819 48.5
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 8.3e-188 661.4 760 50.9
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 3.5e-186 656.0 812 48.5
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 7.8e-186 654.8 794 48.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.3e-185 653.3 786 50.0
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 5.0e-185 652.1 794 48.7
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.5e-184 650.6 777 48.4
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.5e-184 649.8 742 50.9
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 4.3e-184 649.0 835 47.7
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 9.5e-184 647.9 737 50.7
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.2e-183 647.5 787 47.9
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 6.2e-183 645.2 752 49.7
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.8e-182 643.7 787 49.4
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.1e-182 642.9 792 47.5
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 8.9e-182 641.3 783 49.7
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.2e-181 641.0 647 55.0
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 8.3e-180 634.8 689 53.1
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 2.4e-179 633.3 773 48.6
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 4.1e-179 632.5 663 53.1
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 3.5e-178 629.4 778 48.6
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 6.0e-178 628.6 802 48.8
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 3.9e-177 625.9 772 47.9
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 5.0e-177 625.5 813 48.1
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 8.6e-177 624.8 828 46.7
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 4.3e-176 622.5 775 47.9
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 7.3e-176 621.7 770 48.2
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 9.5e-176 621.3 777 48.3
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 3.6e-175 619.4 798 47.6
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 8.1e-175 618.2 777 47.9
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.3e-174 616.7 621 53.6
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 3.1e-174 616.3 762 47.6
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 5.2e-174 615.5 763 47.3
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.5e-173 614.0 770 48.1
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.4e-173 612.8 852 45.0
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 4.4e-173 612.5 763 48.1
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 5.8e-173 612.1 762 48.7
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.7e-172 610.5 770 47.8
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 8.3e-172 608.2 772 47.7
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-171 607.8 774 46.0
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 3.0e-169 599.7 792 47.0
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 5.1e-169 599.0 776 44.8
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 8.6e-169 598.2 747 48.3
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 8.9e-166 588.2 765 46.7
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 3.9e-161 572.8 755 47.4
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.5e-160 570.9 711 49.1
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-157 561.2 709 47.7
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 3.4e-157 559.7 603 52.1
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 9.9e-157 558.1 428 65.2
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.7e-156 557.4 748 46.0
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 4.5e-149 532.7 847 42.0
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 8.4e-148 528.5 637 48.4
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 7.9e-146 521.9 850 42.0
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.0e-145 521.5 828 41.2
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 4.8e-143 512.7 746 43.7
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.2e-140 503.8 748 43.4
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 6.2e-135 485.7 738 41.9
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 8.4e-132 475.3 511 51.9
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 5.3e-126 456.1 478 54.4
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 9.1e-110 402.1 664 38.7
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.8e-102 377.9 463 45.6
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.3e-92 345.1 467 42.8
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.2e-91 340.5 706 35.4
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.5e-88 329.3 570 38.8
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.0e-86 322.8 479 40.5
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.7e-85 319.3 482 40.0
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.5e-83 313.2 433 41.6
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.7e-80 303.1 482 39.4
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.7e-80 303.1 482 39.4
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.3e-79 299.3 474 39.7
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.2e-77 295.4 309 50.8
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-75 287.7 474 38.2
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 8.9e-73 279.3 494 37.7
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.3e-65 254.6 530 42.6
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.1e-57 229.2 196 52.0
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 9.9e-56 222.6 385 40.0
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.2e-50 205.7 620 31.9
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.3e-43 180.6 203 51.7
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.5e-24 119.0 88 55.7
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.9e-23 114.0 429 32.4
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.0e-17 94.4 386 28.2
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 4.5e-16 90.9 75 56.0
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 7.6e-16 90.1 102 45.1
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.2e-14 84.3 54 66.7
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.4e-09 68.6 46 73.9
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 2.4e-09 68.6 53 54.7
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 1.2e-08 66.2 65 60.0
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 2.2e-07 62.0 53 49.1
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 2.9e-07 61.6 53 49.1
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.9e-07 61.6 53 49.1
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.5e-06 58.5 53 47.2
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 3.2e-06 58.2 91 37.4
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 9.4e-06 56.6 75 42.7


User provided reference genes

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