Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.4e-189 664.8 339 100.0
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.5e-186 654.8 337 98.8
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 5.7e-168 594.3 339 86.7
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.1e-166 588.6 339 87.9
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 2.6e-165 585.5 339 86.7
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 7.2e-163 577.4 316 92.7
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.3e-161 572.4 316 92.1
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 7.7e-149 530.8 342 79.8
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.2e-148 529.3 339 79.6
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 5.4e-142 508.1 274 92.0
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 5.0e-140 501.5 340 77.6
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.8e-134 483.0 300 79.3
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 4.5e-133 478.4 330 72.7
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.9e-132 475.7 340 71.5
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 6.6e-132 474.6 330 72.1
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 9.5e-131 470.7 342 71.1
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.2e-130 470.3 345 69.9
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 1.2e-130 470.3 296 78.0
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 1.6e-130 469.9 334 71.3
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 3.6e-130 468.8 342 71.6
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 4.7e-130 468.4 321 73.8
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 4.7e-130 468.4 316 75.0
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 6.1e-130 468.0 333 71.8
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 6.1e-130 468.0 311 75.9
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.0e-129 467.2 322 73.6
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.8e-129 466.5 304 76.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.8e-129 466.5 333 71.5
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 4.0e-129 465.3 303 77.2
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 5.2e-129 464.9 340 69.4
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.2e-129 464.9 343 70.6
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.8e-129 464.5 343 70.6
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.2e-128 463.8 341 70.1
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 1.2e-128 463.8 311 75.2
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.5e-128 463.4 315 74.3
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 2.0e-128 463.0 321 73.8
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 2.0e-128 463.0 304 77.3
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 2.6e-128 462.6 346 67.6
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 2.6e-128 462.6 285 79.3
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 3.4e-128 462.2 346 69.7
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 3.4e-128 462.2 298 77.2
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 4.4e-128 461.8 327 71.9
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 4.4e-128 461.8 278 80.6
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 5.8e-128 461.5 341 69.8
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 9.8e-128 460.7 340 72.1
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 9.8e-128 460.7 350 70.6
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.3e-127 460.3 281 80.1
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.2e-127 459.5 342 69.9
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 2.2e-127 459.5 296 78.4
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 3.7e-127 458.8 343 70.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.7e-127 458.8 339 69.3
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 6.4e-127 458.0 341 70.1
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 8.3e-127 457.6 277 80.9
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 8.3e-127 457.6 333 69.7
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-126 457.2 343 69.7
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.1e-126 457.2 300 75.0
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.1e-126 457.2 343 69.1
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.4e-126 456.8 277 80.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 1.9e-126 456.4 304 76.6
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.9e-126 456.4 289 77.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.9e-126 456.4 305 74.8
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.4e-126 456.1 320 74.1
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.4e-126 456.1 284 79.9
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 4.1e-126 455.3 298 75.8
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 5.4e-126 454.9 333 69.4
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 7.0e-126 454.5 284 76.8
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 7.0e-126 454.5 277 80.1
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.2e-125 453.8 277 80.1
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.6e-125 453.4 300 75.7
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 1.6e-125 453.4 296 76.0
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 1.6e-125 453.4 344 66.0
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.6e-125 453.4 304 74.0
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 2.0e-125 453.0 348 66.7
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 2.0e-125 453.0 343 67.9
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.0e-125 453.0 312 73.7
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 3.5e-125 452.2 344 66.6
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 3.5e-125 452.2 341 68.3
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.7e-124 449.9 296 76.7
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 2.3e-124 449.5 277 79.1
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 2.3e-124 449.5 277 79.1
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 2.3e-124 449.5 277 79.1
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 2.3e-124 449.5 319 71.8
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.3e-124 449.5 338 68.3
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 3.0e-124 449.1 277 79.1
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 5.0e-124 448.4 277 79.1
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 5.0e-124 448.4 277 79.1
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 5.0e-124 448.4 277 79.1
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 6.6e-124 448.0 296 75.0
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 8.6e-124 447.6 277 78.7
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.5e-123 446.8 336 68.5
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.9e-123 446.4 331 69.2
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 2.5e-123 446.0 277 78.7
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.5e-123 446.0 336 68.8
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 4.3e-123 445.3 314 71.3
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 5.6e-123 444.9 277 78.0
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 7.3e-123 444.5 278 78.8
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 9.5e-123 444.1 278 78.8
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.2e-122 443.7 272 80.5
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.6e-122 443.4 340 68.5
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.6e-122 443.4 303 71.6
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.6e-122 443.4 347 67.1
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 3.6e-122 442.2 315 69.5
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 4.7e-122 441.8 278 78.4
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 4.7e-122 441.8 336 67.9
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.2e-122 441.4 308 71.8
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 6.2e-122 441.4 320 70.9
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 6.2e-122 441.4 305 72.1
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.1e-121 439.1 313 69.3
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 4.0e-121 438.7 272 79.0
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 4.0e-121 438.7 353 65.2
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.7e-119 433.3 351 64.7
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 2.9e-119 432.6 352 64.5
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 4.9e-119 431.8 291 73.5
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 6.4e-119 431.4 281 75.8
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.9e-118 429.9 285 72.3
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 4.1e-118 428.7 272 75.0
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 4.1e-118 428.7 265 78.5
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 1.2e-117 427.2 311 66.6
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.7e-117 426.0 281 73.3
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 1.3e-116 423.7 294 69.0
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.6e-114 416.8 287 71.1
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 4.7e-114 415.2 293 67.9
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 8.1e-114 414.5 277 74.7
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.4e-113 413.7 333 63.1
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.8e-113 413.3 282 75.9
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 5.2e-113 411.8 291 70.4
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.2e-112 410.6 307 68.1
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 3.7e-111 405.6 349 62.5
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 4.9e-111 405.2 319 65.5
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 6.4e-111 404.8 283 69.3
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 5.4e-110 401.7 297 64.3
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.6e-109 400.2 306 67.0
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.6e-109 400.2 331 62.2
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.3e-108 396.4 321 63.6
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 1.1e-105 387.5 271 72.3
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 7.6e-104 381.3 318 59.1
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.4e-102 376.3 303 65.0
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 4.3e-99 365.5 289 65.4
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 7.6e-96 354.8 275 62.5
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.5e-91 340.5 300 56.3
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.3e-90 337.4 276 61.2
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 1.1e-89 334.3 254 70.1
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 2.9e-87 326.2 186 86.0
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 4.9e-79 298.9 282 56.7
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.5e-77 292.7 303 50.8
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.3e-76 290.8 183 78.7
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.8e-76 290.4 247 62.8
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.1e-73 279.6 274 50.0
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 9.0e-73 278.1 290 52.1
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.1e-65 252.7 239 60.3
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 3.4e-64 249.6 218 62.4
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 3.8e-63 246.1 174 74.1
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.3e-59 233.0 224 59.8
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.3e-58 228.8 312 45.8
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.0e-55 221.5 178 59.0
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.2e-54 215.3 123 83.7
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 8.2e-50 201.8 303 42.2
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.3e-47 194.5 175 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.7e-42 176.4 183 50.3
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 2.7e-37 160.2 90 85.6
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 8.0e-37 158.7 138 60.1
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 5.3e-33 146.0 77 89.6
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.5e-30 137.1 280 32.1
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.2e-26 124.0 75 81.3
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 4.8e-26 122.9 89 68.5
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 5.4e-25 119.4 152 50.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 3.5e-24 116.7 68 82.4
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.2e-22 109.8 120 49.2
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.0e-20 103.6 66 80.3
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.0e-16 90.9 95 58.9
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.5e-16 90.1 83 54.2
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 8.0e-13 79.0 179 30.7
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 5.6e-06 56.2 57 45.6
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 5.6e-06 56.2 30 90.0


User provided reference genes

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