Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.9e-100 367.9 192 100.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.9e-97 358.2 192 97.9
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 1.7e-84 316.2 187 88.8
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.1e-80 303.5 191 83.2
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 7.4e-80 300.8 191 79.6
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.3e-79 300.1 191 79.6
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.3e-79 300.1 191 79.6
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 3.7e-79 298.5 191 81.7
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 4.8e-79 298.1 194 79.9
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.1e-78 297.0 196 79.1
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.1e-78 297.0 183 82.5
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.1e-78 297.0 187 82.9
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.4e-78 296.6 187 81.8
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.8e-78 296.2 191 80.6
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 4.0e-78 295.0 186 82.3
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 4.0e-78 295.0 187 82.4
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 4.0e-78 295.0 182 83.5
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 5.3e-78 294.7 184 81.5
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 6.9e-78 294.3 186 80.6
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 6.9e-78 294.3 186 80.6
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 9.0e-78 293.9 192 80.7
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.2e-77 293.5 186 80.1
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-77 293.5 187 82.9
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.5e-77 293.1 183 83.1
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.5e-77 293.1 183 82.5
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.5e-77 293.1 194 79.9
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 2.6e-77 292.4 191 80.1
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 3.4e-77 292.0 188 79.3
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.4e-77 292.0 187 81.3
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.5e-77 291.6 188 79.3
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.5e-77 291.6 188 79.3
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.3e-76 290.0 183 79.8
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.3e-76 290.0 179 81.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.7e-76 289.7 186 81.7
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 1.7e-76 289.7 191 79.1
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 2.9e-76 288.9 190 76.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.9e-76 288.9 184 79.3
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 2.9e-76 288.9 186 79.0
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.9e-76 288.9 187 79.7
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 3.8e-76 288.5 191 79.1
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.8e-76 288.5 190 77.4
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.9e-76 288.1 191 78.5
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 4.9e-76 288.1 184 81.5
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.9e-76 288.1 169 86.4
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 4.9e-76 288.1 192 79.2
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 6.4e-76 287.7 191 78.5
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 6.4e-76 287.7 180 81.7
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 8.4e-76 287.3 187 78.6
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 8.4e-76 287.3 187 79.1
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.4e-75 286.6 181 81.2
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.4e-75 286.6 177 81.9
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.9e-75 286.2 186 78.5
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.4e-75 285.8 187 79.1
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.4e-75 285.8 186 80.1
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 3.2e-75 285.4 181 80.1
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 3.2e-75 285.4 187 77.5
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 4.2e-75 285.0 181 79.0
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.2e-75 285.0 184 79.3
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 5.5e-75 284.6 177 80.8
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 7.1e-75 284.3 204 72.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 9.3e-75 283.9 181 78.5
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 9.3e-75 283.9 177 80.2
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 9.3e-75 283.9 172 83.7
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 9.3e-75 283.9 187 77.5
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.1e-74 282.7 185 78.9
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 2.1e-74 282.7 181 80.1
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.1e-74 282.7 183 80.3
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 2.1e-74 282.7 192 78.6
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.7e-74 282.3 192 76.0
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.7e-74 282.3 187 77.5
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.7e-74 282.3 185 77.8
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.7e-74 282.3 193 76.7
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 2.7e-74 282.3 169 84.0
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.7e-74 282.3 194 76.8
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 2.7e-74 282.3 191 75.9
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 2.7e-74 282.3 182 78.6
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 3.5e-74 282.0 185 77.3
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 4.6e-74 281.6 163 90.2
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 6.0e-74 281.2 173 79.8
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 6.0e-74 281.2 194 75.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 6.0e-74 281.2 194 75.3
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 7.9e-74 280.8 181 79.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.0e-73 280.4 187 79.7
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.3e-73 280.0 179 78.8
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.8e-73 279.6 186 76.3
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.8e-73 279.6 186 78.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.0e-73 278.9 175 79.4
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 3.0e-73 278.9 187 79.1
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.9e-73 278.5 175 79.4
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.9e-73 278.5 175 79.4
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 3.9e-73 278.5 186 78.0
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 5.1e-73 278.1 226 67.7
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 5.1e-73 278.1 180 80.0
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.7e-73 277.7 175 79.4
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 8.7e-73 277.3 184 77.7
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 8.7e-73 277.3 193 75.6
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 8.7e-73 277.3 177 80.8
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-72 276.9 182 78.0
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-72 276.9 182 78.0
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.1e-72 276.9 182 78.0
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.1e-72 276.9 182 78.0
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-72 276.6 191 76.4
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.9e-72 276.2 182 77.5
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 5.6e-72 274.6 191 75.9
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.6e-71 273.1 191 74.9
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.4e-69 265.4 220 65.9
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.9e-68 262.3 180 76.7
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 8.4e-68 260.8 229 63.3
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.4e-67 260.0 153 86.3
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.2e-67 258.8 238 62.2
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 2.7e-66 255.8 158 81.0
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.1e-65 251.5 192 70.8
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.1e-64 250.4 237 58.6
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.6e-63 246.5 179 69.3
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.1e-62 243.8 187 72.2
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.2e-60 236.1 181 68.0
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.4e-59 233.4 180 65.6
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.4e-59 230.7 188 70.7
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 5.1e-57 224.9 134 84.3
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 6.7e-57 224.6 140 79.3
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 2.5e-56 222.6 147 77.6
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 4.3e-56 221.9 169 65.1
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.8e-55 219.2 133 82.7
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 8.2e-55 217.6 134 82.1
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 3.1e-54 215.7 169 61.5
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.2e-51 205.7 123 85.4
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.6e-48 196.1 125 77.6
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 4.4e-48 195.3 124 79.8
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 5.7e-48 194.9 138 71.7
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.4e-46 190.3 110 87.3
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.4e-46 190.3 126 78.6
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.8e-46 189.9 125 74.4
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.8e-46 189.9 212 55.2
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 8.8e-41 171.0 112 80.4
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.8e-41 171.0 109 80.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.4e-40 168.7 102 81.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.6e-37 160.2 94 86.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-35 153.3 99 78.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 3.2e-35 152.5 165 47.3
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 8.0e-34 147.9 102 77.5
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.2e-31 139.8 102 70.6
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.2e-31 137.9 81 85.2
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 1.4e-30 137.1 173 42.2
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.2e-29 134.0 84 81.0
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 3.5e-29 132.5 92 76.1
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 3.8e-28 129.0 170 39.4
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.2e-27 125.9 104 66.3
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 3.6e-26 122.5 87 67.8
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.7e-26 122.1 164 37.2
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 2.3e-25 119.8 101 65.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-25 119.4 87 72.4
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.0e-24 116.7 75 76.0
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.7e-18 95.5 64 76.6
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.1e-14 82.8 50 80.0
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.0e-13 80.1 46 82.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.9e-11 73.6 111 47.7
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.5e-11 73.2 114 43.0
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.5e-11 73.2 114 43.0
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.3e-11 72.4 114 43.0
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 5.6e-11 72.0 114 43.0
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.2e-08 64.3 114 41.2
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 9.8e-08 61.2 63 54.0
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 6.4e-07 58.5 36 75.0


User provided reference genes

Program Settings