Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 0.0e+00 1498.0 751 100.0
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 0.0e+00 1273.8 765 86.1
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 5.8e-298 1027.3 787 70.3
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 2.4e-291 1005.4 748 69.1
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 6.1e-279 964.1 751 69.4
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.7e-268 929.5 750 64.9
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 2.2e-257 892.5 748 59.5
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 2.6e-245 852.4 748 57.6
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 7.5e-245 850.9 749 57.5
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 9.7e-245 850.5 747 58.2
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 1.7e-244 849.7 749 57.5
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 5.9e-242 841.3 705 60.4
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.3e-241 840.1 748 57.6
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 2.5e-240 835.9 750 57.9
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 4.2e-240 835.1 748 58.3
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.6e-239 833.2 746 57.1
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 9.8e-237 823.9 727 57.6
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 2.8e-236 822.4 732 57.1
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.4e-235 820.1 739 57.1
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 3.1e-235 818.9 726 57.0
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 1.2e-234 817.0 742 56.5
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 8.9e-230 800.8 740 56.6
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 8.3e-228 794.3 746 54.4
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 1.8e-227 793.1 747 54.6
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 4.1e-227 792.0 751 54.6
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 2.7e-226 789.3 749 54.7
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.7e-225 786.6 730 54.9
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 2.3e-225 786.2 730 55.1
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 2.3e-225 786.2 746 54.4
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 3.9e-225 785.4 741 54.3
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 3.9e-225 785.4 737 53.9
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 5.0e-225 785.0 741 54.3
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 8.6e-225 784.3 730 54.9
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.9e-224 783.1 753 53.8
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.9e-224 783.1 748 54.0
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 2.5e-224 782.7 749 53.5
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 5.6e-224 781.6 750 55.3
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 1.2e-223 780.4 746 53.9
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 2.8e-223 779.2 751 53.5
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 8.0e-223 777.7 759 53.9
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.0e-222 777.3 753 53.8
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 6.8e-222 774.6 748 54.1
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.0e-221 773.1 747 53.4
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 2.6e-221 772.7 748 53.2
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 3.2e-219 765.8 754 53.8
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.2e-218 763.8 748 52.0
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.0e-218 763.1 747 52.7
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 2.7e-218 762.7 750 53.6
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 6.0e-218 761.5 800 51.6
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 6.0e-218 761.5 752 54.1
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 6.6e-217 758.1 739 53.2
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 8.6e-217 757.7 726 54.5
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 1.1e-216 757.3 738 52.8
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 1.1e-216 757.3 726 52.8
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 2.8e-215 752.7 754 53.3
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 6.2e-215 751.5 743 52.5
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.8e-214 750.0 748 52.0
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 4.4e-213 745.3 746 51.7
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 2.2e-212 743.0 750 51.9
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 4.9e-212 741.9 740 51.9
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 6.4e-212 741.5 754 52.5
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 5.4e-211 738.4 755 51.4
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 5.4e-211 738.4 748 51.7
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 9.2e-211 737.6 730 52.6
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 4.0e-206 722.2 728 51.5
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 6.8e-206 721.5 762 49.6
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 7.6e-205 718.0 783 49.0
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.3e-204 717.2 742 51.2
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 4.9e-204 715.3 752 50.1
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 7.8e-202 708.0 744 49.6
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.0e-201 707.6 760 49.5
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 8.1e-199 698.0 749 49.8
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.5e-197 693.7 554 62.8
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 9.9e-197 691.0 739 49.3
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 9.9e-197 691.0 765 48.9
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 4.9e-196 688.7 762 48.8
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 8.4e-196 688.0 740 49.2
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 9.3e-195 684.5 763 48.4
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 2.1e-194 683.3 738 50.0
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 6.0e-194 681.8 744 49.5
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 1.3e-193 680.6 542 62.5
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 3.1e-190 669.5 746 49.5
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 4.2e-187 659.1 738 50.3
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.1e-184 651.0 741 47.8
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 6.2e-183 645.2 727 47.0
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 4.0e-182 642.5 557 59.1
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 5.5e-179 632.1 511 63.0
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.8e-174 617.1 714 47.6
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 1.5e-173 614.0 725 46.1
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 1.8e-166 590.5 728 45.7
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.9e-164 583.2 558 56.5
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 4.3e-160 569.3 735 41.6
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 5.0e-156 555.8 553 53.5
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 2.2e-140 503.8 717 40.4
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 1.5e-131 474.6 727 39.8
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 9.8e-128 461.8 230 96.1
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 1.7e-127 461.1 432 55.8
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 3.3e-107 393.7 733 33.4
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 9.8e-104 382.1 726 33.6
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.3e-100 371.7 226 80.5
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 1.3e-95 355.1 422 48.6
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 8.4e-87 325.9 269 59.1
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.1e-70 272.3 515 34.2
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 6.0e-69 266.5 297 51.9
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.1e-62 243.0 609 30.2
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 9.3e-62 242.7 432 37.3
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.4e-41 174.9 141 57.4
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 4.1e-33 147.5 92 71.7
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 5.9e-32 143.7 124 58.1
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 6.7e-28 130.2 400 27.5
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 6.3e-26 123.6 113 55.8
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 9.1e-25 119.8 157 45.2
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 1.4e-17 95.9 143 42.0
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 2.4e-17 95.1 74 63.5
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 1.3e-15 89.4 166 33.7
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 6.1e-13 80.5 73 54.8
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 3.0e-12 78.2 66 54.5
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 3.0e-12 78.2 79 49.4
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.2e-11 76.3 80 51.2


User provided reference genes

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