Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.5e-92 342.0 167 100.0
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.0e-53 213.8 239 51.9
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.1e-51 206.1 231 48.9
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 6.2e-51 204.5 234 47.0
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.1e-50 203.8 231 48.5
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.4e-50 203.4 234 48.3
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 6.9e-50 201.1 225 45.8
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 2.0e-49 199.5 235 46.8
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.3e-48 196.8 235 45.5
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.3e-48 196.8 235 45.5
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.7e-48 196.4 230 45.2
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 8.4e-48 194.1 234 47.9
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 5.5e-47 191.4 231 47.6
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 7.1e-47 191.0 235 45.5
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 1.2e-46 190.3 228 47.4
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 3.5e-46 188.7 228 47.4
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 6.0e-46 188.0 232 45.7
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 6.0e-46 188.0 228 49.1
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 6.0e-46 188.0 230 45.2
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.0e-45 187.2 223 44.8
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.3e-45 186.8 228 43.9
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.3e-45 186.8 231 45.5
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 1.3e-45 186.8 228 47.8
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.9e-45 185.3 228 46.5
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.1e-44 183.7 228 42.5
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 2.5e-44 182.6 225 44.4
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 4.3e-44 181.8 234 44.0
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 9.7e-44 180.6 231 45.0
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.6e-43 179.9 228 45.6
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.2e-43 179.5 234 45.7
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 2.2e-43 179.5 230 44.8
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 2.8e-43 179.1 228 46.5
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 3.7e-43 178.7 231 44.6
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 4.8e-43 178.3 229 44.5
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 8.2e-43 177.6 237 44.3
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 8.2e-43 177.6 228 43.4
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.4e-42 176.8 239 42.3
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 1.8e-42 176.4 228 43.9
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 2.4e-42 176.0 234 44.9
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 5.3e-42 174.9 228 45.6
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.5e-41 173.3 223 43.9
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 2.6e-41 172.6 239 44.4
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 4.5e-41 171.8 227 42.7
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 4.5e-41 171.8 228 43.0
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 4.5e-41 171.8 228 45.6
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 5.9e-41 171.4 230 44.3
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 7.6e-41 171.0 222 45.9
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 1.0e-40 170.6 226 42.0
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.7e-40 169.9 227 44.5
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 2.9e-40 169.1 224 42.4
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 8.5e-40 167.5 226 42.9
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 8.5e-40 167.5 209 45.9
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 4.2e-39 165.2 237 43.9
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.2e-38 163.7 229 42.8
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.2e-38 163.7 227 41.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.6e-38 163.3 230 41.7
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 2.1e-38 162.9 229 41.9
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.6e-38 162.2 227 41.0
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.6e-38 162.2 93 81.7
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 7.9e-38 161.0 236 42.8
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 3.0e-37 159.1 228 40.8
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 3.0e-37 159.1 210 42.9
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 3.9e-37 158.7 239 41.4
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 8.8e-37 157.5 230 40.4
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 1.5e-36 156.8 234 41.0
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.9e-36 156.4 234 41.0
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 4.3e-36 155.2 227 40.5
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 7.4e-36 154.5 233 40.8
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 7.4e-36 154.5 233 40.8
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.8e-35 152.5 226 40.3
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 4.8e-35 151.8 279 37.6
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 2.4e-34 149.4 234 39.7
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 6.9e-34 147.9 239 38.5
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 9.1e-34 147.5 245 38.4
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 9.1e-34 147.5 233 38.6
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 9.1e-34 147.5 231 38.1
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.2e-33 147.1 211 40.8
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 4.5e-33 145.2 98 72.4
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 4.5e-33 145.2 234 40.2
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.7e-32 143.3 230 39.6
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.2e-32 142.9 228 39.9
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 3.8e-32 142.1 139 55.4
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 5.0e-32 141.7 227 37.9
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 6.5e-32 141.4 282 33.3
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 8.5e-32 141.0 218 39.4
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 8.5e-32 141.0 228 37.7
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-31 140.6 223 41.3
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.1e-31 140.6 232 38.8
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 1.4e-31 140.2 223 40.4
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.4e-31 140.2 213 39.4
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 3.2e-31 139.0 212 40.1
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 7.2e-31 137.9 226 37.6
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 9.4e-31 137.5 229 38.4
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.2e-30 137.1 233 38.6
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.6e-30 136.7 223 39.9
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 4.7e-30 135.2 210 39.0
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.9e-30 134.4 223 39.9
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.0e-29 134.0 218 39.0
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 5.7e-28 128.3 223 35.4
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 8.2e-27 124.4 238 33.2
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.1e-26 124.0 216 38.4
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 3.1e-26 122.5 107 61.7
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 3.4e-25 119.0 236 35.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 4.5e-25 118.6 115 55.7
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.3e-24 117.1 170 43.5
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.3e-24 117.1 233 36.5
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.4e-23 113.6 68 79.4
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 7.2e-23 111.3 234 34.2
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.7e-22 109.4 178 37.1
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.4e-21 107.1 111 49.5
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 3.3e-20 102.4 64 70.3
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 5.7e-20 101.7 230 33.0
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 7.4e-20 101.3 235 32.8
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.3e-19 100.5 209 33.5
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.8e-18 96.7 265 28.7
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 5.3e-18 95.1 66 62.1
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.6e-17 93.6 232 30.2
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 2.2e-16 89.7 77 57.1
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 5.5e-15 85.1 74 55.4
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 5.5e-15 85.1 68 58.8
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 7.2e-15 84.7 73 54.8
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 6.1e-14 81.6 73 54.8
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.8e-13 80.1 70 60.0
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.3e-13 79.7 53 66.0
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 4.8e-11 72.0 138 35.5
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 1.1e-10 70.9 244 27.9
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.8e-10 70.1 104 44.2
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.4e-10 69.7 230 25.7
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 2.0e-09 66.6 222 26.6
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.5e-09 65.9 59 54.2
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 7.7e-09 64.7 169 27.8
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 1.0e-08 64.3 234 28.2
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.3e-08 63.9 94 40.4
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 1.1e-07 60.8 69 47.8


User provided reference genes

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