Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.1e-218 763.1 392 100.0
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 5.9e-177 624.4 454 74.9
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 8.7e-112 407.9 446 54.3
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 3.1e-109 399.4 440 52.5
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 2.7e-97 359.8 433 47.1
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 6.1e-97 358.6 439 46.2
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 2.4e-93 346.7 412 47.6
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 1.5e-92 344.0 409 48.2
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 8.5e-91 338.2 434 45.6
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 2.1e-89 333.6 442 45.2
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 1.4e-88 330.9 444 44.1
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 5.7e-87 325.5 434 44.5
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 5.7e-87 325.5 434 44.5
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 2.2e-86 323.6 394 48.7
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.1e-85 319.3 380 47.4
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 1.2e-84 317.8 380 47.1
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 1.0e-83 314.7 442 43.9
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 1.3e-83 314.3 434 44.9
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 1.3e-83 314.3 438 42.9
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 1.9e-82 310.5 438 42.7
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 3.2e-82 309.7 431 44.1
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 4.2e-82 309.3 382 45.8
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 7.2e-82 308.5 436 42.2
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 3.6e-81 306.2 446 43.5
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 3.0e-80 303.1 439 41.7
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 4.0e-80 302.8 439 41.2
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 6.7e-80 302.0 435 42.5
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 6.7e-80 302.0 438 42.2
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 8.8e-80 301.6 438 40.9
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 2.0e-79 300.4 434 41.7
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 2.6e-79 300.1 435 41.6
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 3.3e-79 299.7 437 42.8
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 3.3e-79 299.7 435 42.1
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 9.7e-79 298.1 367 46.6
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 1.7e-78 297.4 438 42.0
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 6.3e-78 295.4 435 41.6
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 6.3e-78 295.4 388 44.1
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 1.8e-77 293.9 439 41.5
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 3.1e-77 293.1 440 42.5
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 4.1e-77 292.7 424 40.6
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 9.1e-77 291.6 430 40.2
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 9.1e-77 291.6 430 40.2
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 9.1e-77 291.6 430 40.2
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 9.1e-77 291.6 440 42.0
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 9.1e-77 291.6 472 41.1
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 3.5e-76 289.7 424 40.1
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 1.7e-75 287.3 440 40.0
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 6.5e-75 285.4 438 40.0
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 6.5e-75 285.4 436 39.2
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 6.5e-75 285.4 383 44.9
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 8.5e-75 285.0 437 39.8
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 1.5e-74 284.3 381 43.8
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 1.9e-74 283.9 430 39.3
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 7.2e-74 282.0 436 39.0
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 9.4e-74 281.6 436 39.0
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 6.1e-73 278.9 434 40.8
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 1.4e-72 277.7 436 38.8
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 2.3e-72 276.9 379 44.6
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 3.0e-72 276.6 381 43.3
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 6.8e-72 275.4 435 39.1
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 1.5e-71 274.2 438 41.3
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 2.0e-71 273.9 436 38.8
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 4.4e-71 272.7 383 44.1
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 4.4e-71 272.7 379 44.9
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 9.8e-71 271.6 384 44.5
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.3e-70 271.2 382 41.6
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 2.2e-70 270.4 374 43.0
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 1.8e-69 267.3 386 42.7
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 2.7e-68 263.5 438 39.5
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 2.7e-68 263.5 383 41.8
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 1.0e-67 261.5 384 43.2
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.7e-67 260.8 437 38.7
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.3e-67 260.4 445 38.9
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 3.8e-67 259.6 375 42.7
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 6.5e-67 258.8 378 42.3
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.1e-66 258.1 439 39.0
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 9.5e-66 255.0 397 41.6
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 1.6e-65 254.2 386 41.5
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.1e-65 253.8 434 38.7
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.8e-65 253.4 439 38.5
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 2.8e-65 253.4 275 50.2
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 1.4e-64 251.1 437 36.4
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 7.5e-63 245.4 384 39.6
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.3e-62 244.6 384 39.1
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 1.0e-59 235.0 341 43.4
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 1.1e-58 231.5 426 35.7
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.1e-50 204.9 328 39.9
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 1.1e-48 198.4 201 51.2
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 2.3e-43 180.6 203 47.8
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 1.9e-42 177.6 171 52.0
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 4.3e-42 176.4 256 41.4
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 9.5e-42 175.3 513 28.3
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 1.4e-40 171.4 332 36.1
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 4.1e-37 159.8 114 76.3
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 5.4e-37 159.5 268 39.9
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 2.1e-33 147.5 516 27.1
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 1.4e-32 144.8 432 29.4
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 1.4e-24 118.2 215 37.2
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 5.8e-23 112.8 99 58.6
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.2e-20 105.1 235 31.1
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 1.0e-19 102.1 113 48.7
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 2.1e-17 94.4 326 30.7
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 2.8e-17 94.0 99 54.5
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.8e-16 91.3 324 31.2
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 1.3e-14 85.1 108 49.1
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 4.9e-14 83.2 247 29.1
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 1.4e-13 81.6 100 50.0
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 2.4e-13 80.9 207 29.0
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 2.1e-12 77.8 333 27.9
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 3.0e-11 73.9 128 37.5
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 3.7e-09 67.0 242 28.5
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 4.8e-09 66.6 77 50.6
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 2.4e-08 64.3 121 33.9


User provided reference genes

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