Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 7.0e-150 533.9 262 100.0
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.5e-141 505.0 257 96.5
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 6.1e-93 344.7 290 62.8
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 7.9e-85 317.8 245 64.5
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.3e-82 310.5 298 54.7
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.7e-82 310.1 298 54.0
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 3.1e-81 305.8 290 56.2
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 9.1e-81 304.3 263 58.6
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 9.1e-81 304.3 299 53.8
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.3e-79 300.4 191 73.8
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 1.7e-79 300.1 235 63.8
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 5.0e-79 298.5 290 54.8
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 8.5e-79 297.7 174 78.7
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 8.5e-79 297.7 177 76.3
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 1.1e-78 297.4 200 70.5
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.4e-78 297.0 178 76.4
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.4e-78 297.0 173 79.8
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.9e-78 296.6 288 55.2
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 2.5e-78 296.2 174 75.9
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.5e-78 296.2 209 67.5
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 3.2e-78 295.8 191 72.8
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 4.2e-78 295.4 206 68.9
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 4.2e-78 295.4 175 78.9
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 7.2e-78 294.7 173 78.6
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 7.2e-78 294.7 292 55.5
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 9.4e-78 294.3 244 60.7
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.2e-77 293.9 288 53.5
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 2.7e-77 292.7 209 66.5
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 4.7e-77 292.0 178 75.3
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 4.7e-77 292.0 295 52.2
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 4.7e-77 292.0 176 76.7
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 8.0e-77 291.2 246 59.8
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.0e-76 290.8 174 75.9
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.4e-76 290.4 176 76.1
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 5.2e-76 288.5 285 53.7
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 6.7e-76 288.1 174 76.4
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 6.7e-76 288.1 296 51.4
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 8.8e-76 287.7 184 71.7
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 8.8e-76 287.7 184 71.7
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.1e-75 287.3 296 50.7
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 1.5e-75 287.0 186 70.4
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 2.0e-75 286.6 176 75.0
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 2.0e-75 286.6 174 75.9
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 2.0e-75 286.6 175 73.7
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 3.3e-75 285.8 187 69.5
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 4.4e-75 285.4 175 74.3
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 4.4e-75 285.4 186 69.9
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 5.7e-75 285.0 198 68.7
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 5.7e-75 285.0 175 73.7
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 9.7e-75 284.3 261 55.6
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.3e-74 283.9 173 75.7
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 1.3e-74 283.9 182 72.5
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 1.7e-74 283.5 174 73.6
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 2.2e-74 283.1 175 73.1
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 2.2e-74 283.1 184 72.3
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 2.8e-74 282.7 191 68.1
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.7e-74 282.3 181 72.4
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 3.7e-74 282.3 285 56.1
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.1e-73 280.8 178 73.6
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 1.1e-73 280.8 175 74.9
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 2.4e-73 279.6 175 73.1
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 2.4e-73 279.6 173 72.3
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 3.1e-73 279.3 186 68.8
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 3.1e-73 279.3 173 73.4
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 4.1e-73 278.9 176 73.3
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 4.1e-73 278.9 173 75.1
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 4.1e-73 278.9 173 74.6
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 7.0e-73 278.1 229 61.6
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.2e-72 277.3 181 72.9
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 2.0e-72 276.6 175 73.1
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 3.5e-72 275.8 176 71.6
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 3.5e-72 275.8 290 52.4
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 4.5e-72 275.4 186 69.4
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 7.7e-72 274.6 175 73.1
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 7.7e-72 274.6 174 72.4
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.0e-71 274.2 176 72.7
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 1.3e-71 273.9 183 69.9
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 1.3e-71 273.9 173 74.0
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 1.3e-71 273.9 183 69.9
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 1.3e-71 273.9 175 70.9
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.7e-71 273.5 176 71.6
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.7e-71 273.5 176 71.6
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.7e-71 273.5 176 71.6
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.2e-71 273.1 176 71.0
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 3.8e-71 272.3 176 71.6
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 6.5e-71 271.6 176 71.6
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 8.5e-71 271.2 176 70.5
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 1.1e-70 270.8 169 74.6
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 9.4e-70 267.7 172 71.5
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 4.0e-68 262.3 173 67.6
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 5.2e-68 261.9 182 66.5
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 3.4e-67 259.2 279 52.0
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 7.0e-65 251.5 173 64.7
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 8.5e-63 244.6 155 72.9
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 1.9e-62 243.4 186 66.1
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 8.0e-61 238.0 143 75.5
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.8e-57 226.9 187 56.7
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 2.3e-55 219.9 209 55.5
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 4.2e-54 215.7 130 75.4
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 4.4e-51 205.7 130 72.3
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.4e-49 199.9 115 79.1
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.2e-49 199.5 115 79.1
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 9.2e-49 198.0 202 55.0
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 9.8e-43 177.9 105 80.0
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 2.3e-39 166.8 210 44.8
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.5e-38 163.3 181 46.4
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.6e-37 160.6 172 43.6
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 1.4e-36 157.5 97 73.2
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 1.4e-36 157.5 97 73.2
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 1.4e-36 157.5 180 41.7
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.6e-32 144.1 183 44.3
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.1e-30 137.9 89 68.5
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 2.3e-28 130.2 106 61.3
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 3.1e-28 129.8 93 63.4
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 3.5e-24 116.3 63 81.0
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 1.1e-22 111.3 121 52.1
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 1.1e-22 111.3 121 52.1
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.6e-21 107.5 70 67.1
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 1.1e-20 104.8 119 49.6
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 3.8e-18 96.3 118 44.1
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 5.4e-17 92.4 111 44.1
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.6e-16 90.9 50 78.0
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.3e-15 87.8 56 71.4
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.5e-14 84.3 113 46.0
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 2.1e-13 80.5 118 44.1
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 2.1e-13 80.5 118 44.1
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.1e-12 78.2 50 70.0
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 5.1e-07 59.3 38 73.7
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 5.1e-07 59.3 108 38.0
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 6.6e-07 58.9 48 54.2


User provided reference genes

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