Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.2e-51 206.1 95 100.0
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.5e-28 128.6 79 81.0
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 3.3e-25 118.2 61 90.2
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 5.5e-20 100.9 62 71.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.7e-19 98.6 62 69.4
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.3e-18 95.5 60 68.3
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 3.0e-18 95.1 60 66.7
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.0e-18 95.1 60 71.7
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 5.2e-18 94.4 60 71.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 8.8e-18 93.6 60 65.0
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.5e-17 92.8 60 70.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.0e-17 92.4 60 70.0
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 2.6e-17 92.0 60 65.0
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 3.4e-17 91.7 61 63.9
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 3.4e-17 91.7 60 66.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 9.8e-17 90.1 60 65.0
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.3e-16 89.7 60 68.3
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.3e-16 89.7 62 64.5
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.8e-16 88.6 60 68.3
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.7e-16 88.2 60 68.3
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 3.7e-16 88.2 60 63.3
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 4.8e-16 87.8 57 70.2
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 8.3e-16 87.0 60 65.0
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 8.3e-16 87.0 61 62.3
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 8.3e-16 87.0 68 57.4
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 1.1e-15 86.7 68 55.9
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 1.1e-15 86.7 68 55.9
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 1.1e-15 86.7 68 55.9
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 1.1e-15 86.7 60 63.3
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.4e-15 86.3 60 65.0
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.8e-15 85.9 60 66.7
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.8e-15 85.9 60 66.7
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.8e-15 85.9 60 66.7
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.8e-15 85.9 60 66.7
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 1.8e-15 85.9 61 60.7
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 2.4e-15 85.5 60 65.0
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 2.4e-15 85.5 60 65.0
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 4.1e-15 84.7 60 65.0
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 4.1e-15 84.7 60 65.0
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 5.4e-15 84.3 60 65.0
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 5.4e-15 84.3 60 65.0
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 5.4e-15 84.3 60 61.7
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 7.0e-15 84.0 60 61.7
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 7.0e-15 84.0 60 61.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 9.1e-15 83.6 57 66.7
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 9.1e-15 83.6 60 60.0
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 1.2e-14 83.2 60 63.3
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.6e-14 82.8 60 60.0
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.6e-14 82.8 60 60.0
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 2.0e-14 82.4 60 60.0
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.0e-14 82.4 60 60.0
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 2.7e-14 82.0 61 63.9
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 3.5e-14 81.6 61 59.0
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 7.7e-14 80.5 73 52.1
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 7.7e-14 80.5 60 63.3
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.3e-13 79.7 54 66.7
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 3.8e-13 78.2 60 60.0
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 6.5e-13 77.4 61 55.7
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 2.5e-12 75.5 50 60.0
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 5.5e-12 74.3 61 55.7
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 9.5e-12 73.6 60 55.0
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 9.5e-12 73.6 54 59.3
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 1.2e-11 73.2 60 51.7
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 1.2e-11 73.2 61 55.7
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 1.2e-11 73.2 53 64.2
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.6e-11 72.8 60 56.7
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.8e-11 72.0 61 54.1
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.8e-11 72.0 62 51.6
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 3.6e-11 71.6 61 54.1
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 1.0e-10 70.1 47 66.0
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.0e-10 70.1 53 58.5
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 1.4e-10 69.7 60 53.3
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.3e-10 68.9 53 58.5
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 4.0e-10 68.2 57 56.1
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 4.0e-10 68.2 55 56.4
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 5.2e-10 67.8 53 54.7
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 5.2e-10 67.8 57 54.4
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.2e-09 66.6 57 54.4
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 2.0e-09 65.9 55 52.7
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 3.4e-09 65.1 59 52.5
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.4e-09 65.1 46 63.0
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 3.4e-09 65.1 61 50.8
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 3.4e-09 65.1 57 52.6
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 7.5e-09 63.9 55 54.5
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 9.8e-09 63.5 53 54.7
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 1.7e-08 62.8 56 53.6
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 1.7e-08 62.8 60 48.3
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 2.2e-08 62.4 60 53.3
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.8e-08 62.0 53 50.9
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.7e-08 61.6 57 52.6
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 4.9e-08 61.2 55 47.3
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 4.9e-08 61.2 55 47.3
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.9e-08 61.2 53 49.1
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 6.3e-08 60.8 62 48.4
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 8.3e-08 60.5 53 52.8
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 1.1e-07 60.1 55 47.3
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 1.4e-07 59.7 55 45.5
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 1.4e-07 59.7 55 45.5
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.4e-07 59.7 57 50.9
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 3.1e-07 58.5 53 50.9
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 4.1e-07 58.2 43 60.5
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 4.1e-07 58.2 57 49.1
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 5.4e-07 57.8 62 45.2
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 5.4e-07 57.8 53 52.8
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 9.2e-07 57.0 55 49.1
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 9.2e-07 57.0 53 52.8
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 1.2e-06 56.6 56 46.4
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.6e-06 56.2 53 49.1
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.5e-06 55.1 53 47.2
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.5e-06 55.1 53 47.2
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 5.9e-06 54.3 60 43.3


User provided reference genes

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