Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 4.6e-169 597.8 301 100.0
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 6.0e-161 570.9 299 94.6
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 1.1e-125 453.8 294 77.6
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 2.9e-115 419.1 291 68.0
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 2.2e-110 402.9 286 69.9
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 1.1e-98 364.0 291 59.8
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 7.2e-98 361.3 291 59.5
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 2.7e-97 359.4 291 59.1
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 9.7e-95 350.9 291 59.5
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 2.2e-94 349.7 293 56.7
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 2.8e-94 349.4 289 59.5
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 1.8e-93 346.7 297 57.2
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 2.4e-93 346.3 290 57.9
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 3.5e-92 342.4 290 57.9
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 5.9e-92 341.7 290 56.9
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 2.2e-91 339.7 290 56.9
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 2.9e-91 339.3 290 56.9
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 6.5e-91 338.2 294 56.1
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 6.5e-91 338.2 291 56.0
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 1.1e-90 337.4 291 57.4
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 3.2e-90 335.9 290 57.2
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 1.2e-89 334.0 293 56.3
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 1.2e-89 334.0 286 56.6
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 1.6e-89 333.6 296 56.8
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 3.6e-89 332.4 290 55.9
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 4.0e-88 328.9 290 58.6
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 6.7e-88 328.2 290 53.4
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 5.7e-87 325.1 290 54.1
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 1.3e-86 323.9 290 54.1
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 1.7e-86 323.6 290 55.2
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 2.8e-86 322.8 293 54.9
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 3.7e-86 322.4 290 54.5
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 6.3e-86 321.6 291 52.9
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 8.2e-86 321.2 290 54.1
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 2.4e-85 319.7 290 55.2
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 3.1e-85 319.3 290 55.2
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 4.1e-85 318.9 300 54.7
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 5.3e-85 318.5 290 53.4
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 1.2e-84 317.4 295 53.2
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 1.6e-84 317.0 290 53.4
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 5.9e-84 315.1 290 52.4
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 2.9e-83 312.8 294 52.7
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.5e-82 310.5 295 53.2
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 1.9e-82 310.1 291 54.6
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 3.2e-82 309.3 286 53.1
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 7.2e-82 308.1 292 52.4
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 9.4e-82 307.8 290 53.8
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 9.4e-82 307.8 294 51.0
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 2.7e-81 306.2 295 52.9
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 1.8e-80 303.5 297 51.5
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 2.3e-80 303.1 287 51.6
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 3.0e-80 302.8 284 51.1
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 1.2e-79 300.8 293 51.2
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 1.2e-79 300.8 289 51.6
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 1.5e-79 300.4 284 51.8
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 7.5e-79 298.1 294 51.7
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 9.8e-79 297.7 294 51.4
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 9.8e-79 297.7 245 59.6
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 4.8e-78 295.4 321 46.4
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 1.1e-77 294.3 293 50.2
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 1.2e-76 290.8 291 49.5
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 1.2e-76 290.8 287 50.2
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 2.0e-76 290.0 293 49.5
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 2.0e-76 290.0 290 50.7
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 5.9e-76 288.5 294 48.6
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 7.7e-76 288.1 294 50.3
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 7.7e-76 288.1 291 50.5
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 1.7e-75 287.0 287 49.8
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 1.7e-75 287.0 287 49.8
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 5.0e-75 285.4 294 49.3
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 1.1e-74 284.3 291 51.9
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 1.5e-74 283.9 261 53.6
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 1.9e-74 283.5 294 49.3
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 5.5e-74 282.0 294 48.6
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 7.2e-74 281.6 294 48.0
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 1.6e-73 280.4 290 46.2
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 6.1e-73 278.5 268 51.9
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 8.0e-73 278.1 220 60.5
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 8.3e-70 268.1 288 46.9
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 1.4e-69 267.3 290 47.6
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 4.5e-68 262.3 294 45.9
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 3.8e-67 259.2 286 47.2
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 6.6e-67 258.5 215 58.1
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 1.5e-66 257.3 247 51.4
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 1.2e-65 254.2 218 54.1
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 4.4e-63 245.7 246 50.0
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 4.4e-63 245.7 199 59.3
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 7.5e-63 245.0 246 49.6
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 7.8e-60 235.0 218 53.2
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 2.3e-56 223.4 288 42.4
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 3.2e-53 213.0 287 40.4
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 1.2e-52 211.1 198 54.5
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 4.3e-50 202.6 198 48.5
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 4.3e-50 202.6 305 39.7
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 3.6e-49 199.5 279 41.2
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.1e-49 198.4 290 42.4
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 4.9e-46 189.1 214 46.7
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 1.2e-44 184.5 204 47.1
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 1.9e-42 177.2 281 39.1
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 1.9e-42 177.2 293 38.2
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 5.6e-34 149.1 129 59.7
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 1.8e-32 144.1 236 38.6
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 3.5e-28 129.8 142 50.7
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 3.8e-22 109.8 134 40.3
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 1.3e-19 101.3 116 47.4
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 8.1e-17 92.0 116 40.5
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 3.9e-11 73.2 89 41.6
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 8.7e-11 72.0 98 43.9
Medtr0152s0050 Medicago truncatula HOM05D007013 ORTHO05D008999 6.9e-08 62.4 67 46.3
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 5.8e-07 59.3 110 33.6


User provided reference genes

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