Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 7.7e-58 226.9 109 100.0
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.2e-52 208.8 110 93.6
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 3.1e-27 125.2 110 62.7
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 1.6e-23 112.8 115 53.9
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 1.8e-22 109.4 116 53.4
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.0e-21 105.9 121 48.8
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 1.8e-19 99.4 115 41.7
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 1.7e-17 92.8 120 41.7
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 1.1e-16 90.1 112 44.6
AUR62020444 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.1e-16 90.1 114 44.7
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.1e-16 90.1 120 43.3
AUR62015774 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.5e-16 89.7 114 44.7
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 4.3e-16 88.2 114 44.7
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.3e-16 87.4 125 44.0
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.3e-16 87.4 125 43.2
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 7.3e-16 87.4 125 43.2
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.1e-15 85.9 127 45.7
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.8e-15 85.5 127 43.3
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 3.6e-15 85.1 117 45.3
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 3.6e-15 85.1 108 47.2
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 8.0e-15 84.0 131 44.3
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 8.0e-15 84.0 126 44.4
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 1.0e-14 83.6 126 40.5
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.4e-14 83.2 126 41.3
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 1.4e-14 83.2 117 43.6
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.8e-14 82.8 123 40.7
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 1.8e-14 82.8 134 42.5
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 2.3e-14 82.4 134 41.0
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 2.3e-14 82.4 132 40.9
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.2e-13 80.1 137 41.6
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.2e-13 80.1 128 40.6
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 2.6e-13 79.0 131 39.7
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.6e-13 79.0 119 44.5
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 4.4e-13 78.2 130 39.2
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 5.8e-13 77.8 123 41.5
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 7.5e-13 77.4 137 40.1
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 7.5e-13 77.4 128 39.8
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 9.8e-13 77.0 130 38.5
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.3e-12 76.6 130 40.8
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 2.2e-12 75.9 133 40.6
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 4.9e-12 74.7 132 38.6
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 4.9e-12 74.7 112 40.2
AUR62015773 Chenopodium quinoa HOM05D003074 ORTHO05D002434 6.4e-12 74.3 97 46.4
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 6.4e-12 74.3 119 42.0
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 1.4e-11 73.2 129 37.2
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.4e-11 73.2 132 35.6
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.9e-11 72.8 118 42.4
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.4e-11 72.4 144 36.1
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.4e-11 72.4 118 41.5
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 3.2e-11 72.0 123 38.2
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 3.2e-11 72.0 115 39.1
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 4.1e-11 71.6 132 38.6
Sc16g0006080 Simmondsia chinensis HOM05D003074 ORTHO05D002434 4.1e-11 71.6 114 36.8
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 5.4e-11 71.2 132 38.6
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 7.0e-11 70.9 123 35.0
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 1.2e-10 70.1 118 37.3
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 1.2e-10 70.1 119 36.1
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 1.6e-10 69.7 107 41.1
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.6e-10 69.7 132 36.4
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.0e-10 69.3 120 36.7
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 3.5e-10 68.6 108 42.6
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 4.6e-10 68.2 150 34.0
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 4.6e-10 68.2 119 38.7
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 6.0e-10 67.8 133 37.6
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 6.0e-10 67.8 124 40.3
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 7.8e-10 67.4 124 33.1
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 7.8e-10 67.4 121 33.1
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 7.8e-10 67.4 118 36.4
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.8e-10 67.4 113 45.1
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.3e-09 66.6 113 45.1
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 1.7e-09 66.2 138 36.2
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 1.7e-09 66.2 109 41.3
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.9e-09 65.1 121 38.0
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 3.9e-09 65.1 132 34.1
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.0e-09 64.7 146 34.2
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.0e-09 64.7 146 34.2
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 5.0e-09 64.7 121 38.8
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 5.0e-09 64.7 116 37.1
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 6.6e-09 64.3 144 34.7
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 6.6e-09 64.3 121 39.7
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.6e-09 63.9 146 34.2
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.1e-08 63.5 116 35.3
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.1e-08 63.5 120 38.3
Sc17g0007340 Simmondsia chinensis HOM05D003074 ORTHO05D002434 1.1e-08 63.5 114 36.0
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 1.5e-08 63.2 113 35.4
BraA05t21736Z Brassica rapa HOM05D010457 ORTHO05D002434 1.5e-08 63.2 122 33.6
AUR62021958 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.5e-08 63.2 119 37.0
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.5e-08 63.2 112 39.3
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.5e-08 63.2 112 39.3
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 1.5e-08 63.2 121 33.9
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.5e-08 63.2 126 34.9
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 1.5e-08 63.2 143 32.2
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.9e-08 62.8 138 35.5
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 1.9e-08 62.8 141 36.9
DCAR_022560 Daucus carota HOM05D003074 ORTHO05D002434 2.5e-08 62.4 128 28.1
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 2.5e-08 62.4 106 39.6
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 2.5e-08 62.4 146 33.6
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 2.5e-08 62.4 107 40.2
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 2.5e-08 62.4 132 34.8
AUR62012700 Chenopodium quinoa HOM05D003074 ORTHO05D002434 3.3e-08 62.0 115 36.5
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 3.3e-08 62.0 102 43.1
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 3.3e-08 62.0 130 31.5
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 3.3e-08 62.0 131 31.3
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 5.6e-08 61.2 116 35.3
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 7.3e-08 60.8 110 38.2
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 7.3e-08 60.8 108 37.0
Nitab4.5_0009398g0020 Nicotiana tabacum HOM05D003074 ORTHO05D002434 7.3e-08 60.8 118 32.2
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 7.3e-08 60.8 133 36.1
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 9.5e-08 60.5 147 33.3
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 9.5e-08 60.5 120 37.5
Aa31LG8G7150 Aethionema arabicum HOM05D010457 ORTHO05D002434 1.2e-07 60.1 115 30.4
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.2e-07 60.1 122 32.8
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 1.2e-07 60.1 129 33.3
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 1.2e-07 60.1 124 33.1
BcaB06g26099 Brassica carinata HOM05D010457 ORTHO05D002434 1.6e-07 59.7 127 32.3
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 1.6e-07 59.7 113 38.1
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 1.6e-07 59.7 111 38.7
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 1.6e-07 59.7 107 37.4
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.6e-07 59.7 130 33.1
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.6e-07 59.7 117 39.3
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.6e-07 59.7 64 51.6
A05p28590 Brassica napus HOM05D010457 ORTHO05D002434 2.1e-07 59.3 123 32.5
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 2.1e-07 59.3 114 38.6
Glyma.17G014100 Glycine max HOM05D008677 ORTHO05D002434 2.1e-07 59.3 127 29.1
Solyc12g005000.1 Solanum lycopersicum HOM05D003074 ORTHO05D002434 2.1e-07 59.3 109 44.0
Carub.0003s2029 Capsella rubella HOM05D010457 ORTHO05D002434 2.8e-07 58.9 116 33.6
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 2.8e-07 58.9 83 44.6
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 2.8e-07 58.9 116 31.0
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 2.8e-07 58.9 113 37.2
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 2.8e-07 58.9 125 36.0
Aqoxy1G02177 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.6e-07 58.5 121 31.4
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 4.7e-07 58.2 130 32.3
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 6.2e-07 57.8 107 36.4
BcaC05g28318 Brassica carinata HOM05D010457 ORTHO05D002434 8.0e-07 57.4 125 32.0
C05p44000 Brassica napus HOM05D010457 ORTHO05D002434 8.0e-07 57.4 125 32.0
BolC5t33118H Brassica oleracea HOM05D010457 ORTHO05D002434 8.0e-07 57.4 125 32.0
Nitab4.5_0000653g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 8.0e-07 57.4 97 40.2
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 1.1e-06 57.0 129 34.1
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.1e-06 57.0 133 33.1
unitig_85.g27325 Utricularia gibba HOM05D003074 ORTHO05D002434 1.4e-06 56.6 107 34.6
Glyma.07G259800 Glycine max HOM05D008677 ORTHO05D002434 1.8e-06 56.2 129 30.2
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 1.8e-06 56.2 110 38.2
Glyma.07G259900 Glycine max HOM05D008677 ORTHO05D002434 2.3e-06 55.8 126 29.4
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.3e-06 55.8 104 39.4
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 3.1e-06 55.5 115 32.2
Lj6g0026915 Lotus japonicus HOM05D008677 ORTHO05D002434 3.1e-06 55.5 134 33.6
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 3.1e-06 55.5 65 47.7
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 3.1e-06 55.5 65 47.7
Medtr5g092710 Medicago truncatula HOM05D003074 ORTHO05D002434 4.0e-06 55.1 105 37.1
TPR.G9935 Trifolium pratense HOM05D008677 ORTHO05D002434 4.0e-06 55.1 128 33.6
BcaC09g48988 Brassica carinata HOM05D010457 ORTHO05D002434 5.2e-06 54.7 124 29.8
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 5.2e-06 54.7 122 29.5
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 5.2e-06 54.7 79 40.5
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 6.8e-06 54.3 75 40.0
BcaB04g20658 Brassica carinata HOM05D010457 ORTHO05D002434 6.8e-06 54.3 127 29.1
C01p43750 Brassica napus HOM05D010457 ORTHO05D002434 6.8e-06 54.3 127 29.9
BolC1t04334H Brassica oleracea HOM05D010457 ORTHO05D002434 6.8e-06 54.3 127 29.9
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 6.8e-06 54.3 68 50.0
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 6.8e-06 54.3 116 37.1
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 8.9e-06 53.9 121 31.4
Nitab4.5_0009995g0020 Nicotiana tabacum HOM05D003074 ORTHO05D002434 8.9e-06 53.9 99 38.4


User provided reference genes

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