Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015693 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.7e-35 152.1 75 100.0
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.6e-22 107.8 73 72.6
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 5.3e-18 94.0 73 63.0
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 1.6e-17 92.4 73 60.3
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 3.5e-17 91.3 73 58.9
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 3.5e-17 91.3 73 61.6
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 5.9e-17 90.5 73 58.9
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 1.0e-16 89.7 73 58.9
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.0e-16 89.7 73 60.3
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 1.0e-16 89.7 73 58.9
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.3e-16 89.4 73 58.9
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 1.3e-16 89.4 73 58.9
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 1.7e-16 89.0 73 57.5
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 1.7e-16 89.0 73 54.8
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 1.7e-16 89.0 73 57.5
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.7e-16 89.0 73 57.5
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 2.9e-16 88.2 73 56.2
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 3.8e-16 87.8 73 57.5
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 3.8e-16 87.8 73 58.9
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 5.0e-16 87.4 73 56.2
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 5.0e-16 87.4 71 59.2
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 6.5e-16 87.0 73 56.2
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 6.5e-16 87.0 73 54.8
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 8.5e-16 86.7 73 57.5
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 1.1e-15 86.3 73 57.5
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.5e-15 85.9 73 56.2
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 1.5e-15 85.9 73 54.8
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.5e-15 85.9 73 56.2
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 1.9e-15 85.5 73 57.5
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 1.9e-15 85.5 73 54.8
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 1.9e-15 85.5 73 54.8
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 1.9e-15 85.5 75 57.3
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.2e-15 84.7 73 56.2
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 3.2e-15 84.7 73 54.8
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 3.2e-15 84.7 71 57.7
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 4.2e-15 84.3 73 56.2
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 4.2e-15 84.3 73 54.8
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 5.5e-15 84.0 65 61.5
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 5.5e-15 84.0 73 57.5
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 5.5e-15 84.0 65 61.5
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 7.2e-15 83.6 73 54.8
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 7.2e-15 83.6 73 54.8
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 7.2e-15 83.6 66 62.1
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 9.4e-15 83.2 73 53.4
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 9.4e-15 83.2 73 54.8
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 9.4e-15 83.2 73 56.2
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 1.2e-14 82.8 73 54.8
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.2e-14 82.8 73 54.8
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 1.2e-14 82.8 73 53.4
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 2.1e-14 82.0 66 60.6
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 2.1e-14 82.0 73 52.1
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 2.1e-14 82.0 73 52.1
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 2.1e-14 82.0 72 56.9
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 2.1e-14 82.0 73 53.4
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 2.7e-14 81.6 65 61.5
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 2.7e-14 81.6 66 60.6
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 3.6e-14 81.3 65 58.5
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.6e-14 81.3 65 61.5
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 4.7e-14 80.9 73 53.4
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 4.7e-14 80.9 65 60.0
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 6.1e-14 80.5 71 53.5
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 6.1e-14 80.5 71 53.5
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 6.1e-14 80.5 73 52.1
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 1.0e-13 79.7 73 53.4
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 1.0e-13 79.7 68 57.4
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 1.4e-13 79.3 73 50.7
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.8e-13 79.0 65 60.0
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 2.3e-13 78.6 73 54.8
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 2.3e-13 78.6 73 54.8
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 2.3e-13 78.6 70 55.7
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 2.3e-13 78.6 61 62.3
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 3.0e-13 78.2 73 53.4
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 3.0e-13 78.2 70 55.7
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 3.0e-13 78.2 73 53.4
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 3.0e-13 78.2 68 55.9
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 4.0e-13 77.8 73 56.2
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 4.0e-13 77.8 66 56.1
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 5.2e-13 77.4 66 57.6
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 5.2e-13 77.4 63 61.9
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 5.2e-13 77.4 66 59.1
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 6.8e-13 77.0 73 53.4
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 6.8e-13 77.0 73 53.4
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.2e-12 76.3 66 56.1
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 1.2e-12 76.3 63 58.7
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 2.0e-12 75.5 68 54.4
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 2.0e-12 75.5 73 52.1
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 2.0e-12 75.5 73 52.1
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.0e-12 75.5 59 62.7
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 5.7e-12 73.9 63 57.1
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 5.7e-12 73.9 65 55.4
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 5.7e-12 73.9 73 53.4
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 7.5e-12 73.6 73 54.8
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 9.7e-12 73.2 65 53.8
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 9.7e-12 73.2 61 60.7
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 9.7e-12 73.2 73 50.7
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 9.7e-12 73.2 61 59.0
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 1.7e-11 72.4 73 49.3
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 2.2e-11 72.0 73 47.9
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 2.4e-10 68.6 73 45.2
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 7.0e-10 67.0 72 44.4
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 7.0e-10 67.0 73 45.2
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 2.2e-08 62.0 73 42.5
CDE05G1658 Ceratophyllum demersum HOM05D001310 ORTHO05D001283 6.5e-08 60.5 71 40.8
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 6.5e-08 60.5 73 39.7
CDE11G0307 Ceratophyllum demersum HOM05D001310 ORTHO05D001283 1.5e-07 59.3 71 39.4
MCO12G083 Micromonas commoda HOM05D003946 ORTHO05D004485 2.5e-07 58.5 55 49.1
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 2.5e-07 58.5 73 39.7
CANSAT80G2848 Cannabis sativa HOM05D001310 ORTHO05D001283 3.2e-07 58.2 59 44.1
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 3.2e-07 58.2 73 41.1
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 3.2e-07 58.2 73 39.7
DCAR_014505 Daucus carota HOM05D001310 ORTHO05D001283 4.2e-07 57.8 59 44.1
MCO13G437 Micromonas commoda HOM05D002462 ORTHO05D002893 4.2e-07 57.8 69 44.9
Lj5C158T11 Lonicera japonica HOM05D001310 ORTHO05D001283 9.4e-07 56.6 71 39.4
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 9.4e-07 56.6 40 65.0
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.2e-06 56.2 73 39.7
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 1.6e-06 55.8 77 42.9
Lsat_1_v5_gn_8_301 Lactuca sativa HOM05D001310 ORTHO05D001283 1.6e-06 55.8 71 39.4
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 1.6e-06 55.8 84 36.9
Hund23305 Selenicereus undatus HOM05D001340 ORTHO05D011069 1.6e-06 55.8 71 40.8
MD14G1236500 Malus domestica HOM05D001310 ORTHO05D001283 2.1e-06 55.5 71 39.4
Medtr8g107280 Medicago truncatula HOM05D001310 ORTHO05D001283 2.1e-06 55.5 71 38.0
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 2.1e-06 55.5 71 39.4
Ah.02g113440 Amaranthus hybridus HOM05D017185 ORTHO05D002895 2.7e-06 55.1 67 43.3
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 2.7e-06 55.1 72 40.3
Migut.D01540 Erythranthe guttata HOM05D001310 ORTHO05D001283 3.6e-06 54.7 70 37.1
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 4.7e-06 54.3 73 37.0
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 4.7e-06 54.3 59 44.1
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 4.7e-06 54.3 59 42.4
MD06G1227100 Malus domestica HOM05D001310 ORTHO05D001283 4.7e-06 54.3 71 39.4
Pp3c21_15890 Physcomitrium patens HOM05D001310 ORTHO05D001283 6.1e-06 53.9 73 39.7
Pp3c7_6470 Physcomitrium patens HOM05D001310 ORTHO05D001283 6.1e-06 53.9 73 39.7
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 6.1e-06 53.9 73 38.4
SMO165G0113 Selaginella moellendorffii HOM05D004243 ORTHO05D005018 6.1e-06 53.9 56 42.9
PRCOL_00005371 Prasinoderma coloniale HOM05D001340 ORTHO05D001484 8.0e-06 53.5 73 39.7


User provided reference genes

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