Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.6e-71 270.0 133 100.0
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.4e-61 238.8 130 90.0
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.8e-59 231.5 130 86.9
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.6e-33 146.4 148 51.4
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.1e-29 131.7 139 53.2
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.5e-28 128.3 151 51.0
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 2.2e-27 125.9 153 49.0
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 6.5e-27 124.4 129 48.8
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 1.4e-24 116.7 133 51.1
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.3e-22 107.8 133 48.1
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 3.1e-21 105.5 149 43.6
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 2.7e-20 102.4 143 43.4
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.7e-20 102.4 132 45.5
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.0e-19 100.5 142 42.3
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.3e-19 99.4 142 42.3
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.6e-19 97.8 112 50.9
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 8.6e-19 97.4 125 41.6
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.9e-18 96.3 144 41.0
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.9e-18 96.3 144 41.0
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 2.5e-18 95.9 108 46.3
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 9.5e-18 94.0 147 42.2
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 3.6e-17 92.0 147 38.1
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 8.0e-17 90.9 131 39.7
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.0e-16 90.5 129 42.6
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 1.4e-16 90.1 130 41.5
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.4e-16 90.1 143 37.8
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.4e-16 90.1 132 40.2
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.4e-16 90.1 148 37.8
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.8e-16 89.7 147 36.1
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 1.8e-16 89.7 133 42.1
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 2.3e-16 89.4 146 39.7
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 4.0e-16 88.6 115 41.7
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 4.0e-16 88.6 143 41.3
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 5.2e-16 88.2 115 42.6
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 8.9e-16 87.4 103 46.6
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.5e-15 86.7 110 42.7
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 2.6e-15 85.9 137 38.0
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 2.6e-15 85.9 130 40.8
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 5.7e-15 84.7 122 40.2
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 7.5e-15 84.3 111 41.4
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 7.5e-15 84.3 129 40.3
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 9.8e-15 84.0 145 39.3
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 9.8e-15 84.0 134 41.8
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 1.3e-14 83.6 142 37.3
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.7e-14 83.2 152 40.1
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.7e-14 83.2 142 38.0
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 1.7e-14 83.2 136 41.2
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 2.2e-14 82.8 88 48.9
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.2e-14 82.8 130 37.7
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 2.2e-14 82.8 143 38.5
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 2.8e-14 82.4 144 39.6
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 3.7e-14 82.0 107 42.1
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 6.3e-14 81.3 130 36.9
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.3e-14 81.3 103 43.7
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 6.3e-14 81.3 130 38.5
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.3e-14 80.9 65 63.1
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.1e-13 80.5 150 38.0
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.4e-13 80.1 133 36.1
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 1.4e-13 80.1 130 36.9
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.4e-13 80.1 130 36.9
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.8e-13 79.7 105 41.0
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.8e-13 79.7 132 39.4
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 2.4e-13 79.3 148 36.5
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.4e-13 79.3 130 36.9
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 3.2e-13 79.0 103 44.7
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.2e-13 79.0 143 37.8
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 3.2e-13 79.0 82 47.6
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 3.2e-13 79.0 131 41.2
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.1e-13 78.6 130 36.9
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 4.1e-13 78.6 150 35.3
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 4.1e-13 78.6 114 39.5
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 4.1e-13 78.6 149 36.9
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 5.4e-13 78.2 150 37.3
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 5.4e-13 78.2 115 41.7
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 5.4e-13 78.2 144 37.5
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 5.4e-13 78.2 90 47.8
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 5.4e-13 78.2 149 36.2
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 9.2e-13 77.4 132 36.4
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 9.2e-13 77.4 148 33.1
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 1.2e-12 77.0 131 35.9
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.0e-12 76.3 100 40.0
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.0e-12 76.3 100 40.0
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 2.7e-12 75.9 147 32.7
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.7e-12 75.9 102 39.2
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.7e-12 75.9 110 41.8
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 2.7e-12 75.9 133 37.6
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.5e-12 75.1 126 38.1
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 4.5e-12 75.1 153 34.0
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 5.9e-12 74.7 139 31.7
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 5.9e-12 74.7 133 36.1
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 7.8e-12 74.3 92 45.7
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 7.8e-12 74.3 118 37.3
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 7.8e-12 74.3 136 39.0
AUR62020516 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.3e-11 73.6 85 48.2
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.3e-11 72.8 105 41.0
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 3.9e-11 72.0 112 39.3
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 5.0e-11 71.6 135 34.8
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 5.0e-11 71.6 109 40.4
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 5.0e-11 71.6 138 36.2
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 6.6e-11 71.2 130 36.9
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 8.6e-11 70.9 96 42.7
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 8.6e-11 70.9 149 34.2
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 8.6e-11 70.9 149 34.2
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.1e-10 70.5 127 37.0
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 1.1e-10 70.5 108 35.2
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 1.5e-10 70.1 113 36.3
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.9e-10 69.7 146 34.9
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 3.3e-10 68.9 148 33.1
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 3.3e-10 68.9 148 33.1
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 5.6e-10 68.2 111 35.1
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 7.3e-10 67.8 103 38.8
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 7.3e-10 67.8 91 42.9
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 7.3e-10 67.8 129 31.0
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 9.5e-10 67.4 129 35.7
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 1.6e-09 66.6 79 45.6
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 1.6e-09 66.6 129 36.4
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 2.1e-09 66.2 145 33.1
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.1e-09 66.2 125 34.4
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 3.6e-09 65.5 124 37.1
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.7e-09 65.1 125 35.2
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 6.1e-09 64.7 110 37.3
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 8.0e-09 64.3 110 37.3
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 1.4e-08 63.5 109 34.9
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.8e-08 63.2 104 37.5
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.3e-08 62.8 108 37.0
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 4.0e-08 62.0 143 32.2
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.8e-08 61.2 115 32.2
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.9e-08 60.8 80 42.5
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 2.0e-07 59.7 107 37.4
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 2.0e-07 59.7 90 38.9
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 2.6e-07 59.3 91 39.6
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 4.4e-07 58.5 128 28.1
PSO339G0204 Papaver somniferum HOM05D000395 ORTHO05D000088 5.8e-07 58.2 57 45.6
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 7.5e-07 57.8 64 45.3
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 9.8e-07 57.4 136 33.1
CANSAT01G1431 Cannabis sativa HOM05D000395 ORTHO05D000088 1.7e-06 56.6 72 47.2
Manes.13G130950 Manihot esculenta HOM05D000395 ORTHO05D000088 3.7e-06 55.5 92 32.6
arahy.Tifrunner.gnm1.ann1.SU40KZ Arachis hypogaea HOM05D000395 ORTHO05D000088 6.4e-06 54.7 57 49.1


User provided reference genes

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