Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.2e-87 326.6 191 100.0
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 2.0e-37 159.8 179 53.1
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.2e-29 134.0 177 48.0
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 1.5e-29 133.7 152 52.0
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 2.0e-29 133.3 177 49.2
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 4.5e-29 132.1 162 46.9
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 7.7e-29 131.3 132 56.1
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.0e-28 131.0 162 46.9
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 5.0e-28 128.6 187 42.8
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.1e-27 127.5 163 47.2
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.4e-27 127.1 141 52.5
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.5e-27 126.3 182 45.1
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 3.2e-27 125.9 177 46.9
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 3.2e-27 125.9 177 46.9
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 3.2e-27 125.9 139 48.2
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 4.2e-27 125.6 148 48.6
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 5.5e-27 125.2 150 46.0
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 7.2e-27 124.8 128 53.9
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.2e-27 124.8 128 53.9
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.2e-27 124.8 128 53.9
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 9.4e-27 124.4 178 42.7
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 1.6e-26 123.6 176 44.9
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 2.1e-26 123.2 189 43.4
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 2.1e-26 123.2 176 43.8
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.7e-26 122.1 182 43.4
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 4.7e-26 122.1 128 52.3
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 6.1e-26 121.7 174 48.9
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 6.1e-26 121.7 162 46.3
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 6.1e-26 121.7 148 48.0
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 6.1e-26 121.7 174 43.1
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 6.1e-26 121.7 160 44.4
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 7.9e-26 121.3 176 43.2
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 1.8e-25 120.2 126 51.6
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 1.8e-25 120.2 126 54.8
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.8e-25 120.2 166 44.0
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.3e-25 119.8 148 47.3
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.0e-25 119.4 186 42.5
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 3.0e-25 119.4 127 52.8
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 3.9e-25 119.0 134 55.2
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 5.2e-25 118.6 139 50.4
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 6.7e-25 118.2 187 40.6
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.1e-24 117.5 158 48.7
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 1.1e-24 117.5 182 42.3
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 1.5e-24 117.1 178 42.1
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 1.5e-24 117.1 168 44.6
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.6e-24 116.3 159 46.5
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 3.3e-24 115.9 125 49.6
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 5.7e-24 115.2 175 41.7
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 7.4e-24 114.8 127 54.3
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 7.4e-24 114.8 127 51.2
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.7e-23 113.6 137 52.6
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.7e-23 113.6 173 43.9
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 2.8e-23 112.8 127 47.2
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 2.8e-23 112.8 129 51.9
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 6.3e-23 111.7 189 38.1
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 6.3e-23 111.7 134 49.3
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 6.3e-23 111.7 180 39.4
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 8.2e-23 111.3 161 42.2
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.8e-22 110.2 186 41.4
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 4.1e-22 109.0 119 47.9
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 1.2e-21 107.5 175 41.1
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.6e-21 107.1 126 56.3
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.6e-21 107.1 176 49.4
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 1.6e-21 107.1 176 40.9
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 2.0e-21 106.7 124 50.0
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 3.5e-21 105.9 128 50.0
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 3.5e-21 105.9 178 40.4
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 4.5e-21 105.5 127 47.2
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 5.9e-21 105.1 141 48.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 7.7e-21 104.8 162 41.4
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.0e-20 104.4 127 46.5
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 1.3e-20 104.0 126 50.8
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 5.0e-20 102.1 191 38.2
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 6.5e-20 101.7 127 47.2
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 6.5e-20 101.7 127 48.0
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 6.5e-20 101.7 127 46.5
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 6.5e-20 101.7 127 46.5
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 8.5e-20 101.3 142 46.5
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-19 100.9 132 43.2
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.5e-19 100.5 126 46.0
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.5e-19 100.5 187 38.0
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 3.2e-19 99.4 132 43.2
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 3.2e-19 99.4 126 45.2
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 9.4e-19 97.8 157 41.4
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 1.2e-18 97.4 127 50.4
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 1.2e-18 97.4 121 47.1
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 1.2e-18 97.4 121 47.1
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.2e-18 97.4 221 44.3
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.6e-18 97.1 234 34.2
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 1.6e-18 97.1 193 46.1
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.6e-18 97.1 176 51.1
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 2.1e-18 96.7 125 45.6
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.7e-18 96.3 127 44.9
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 1.0e-17 94.4 131 43.5
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 1.0e-17 94.4 131 43.5
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.4e-17 94.0 129 43.4
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 1.4e-17 94.0 129 44.2
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 1.8e-17 93.6 168 37.5
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.3e-17 93.2 127 44.9
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 4.0e-17 92.4 121 49.6
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 4.0e-17 92.4 121 49.6
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 4.0e-17 92.4 245 29.4
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 4.0e-17 92.4 124 42.7
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 5.2e-17 92.0 120 45.8
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 6.7e-17 91.7 123 45.5
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 1.2e-16 90.9 127 45.7
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 1.5e-16 90.5 189 38.6
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 5.7e-16 88.6 196 37.8
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.7e-15 87.0 234 32.1
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 2.2e-15 86.7 155 38.1
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.8e-15 86.3 125 45.6
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 4.8e-15 85.5 133 41.4
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 2.0e-13 80.1 183 33.9
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 5.0e-12 75.5 123 39.8
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 5.0e-12 75.5 141 41.1
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 1.5e-11 73.9 134 38.8
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.2e-11 72.8 134 37.3
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 9.4e-11 71.2 130 38.5
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.7e-10 68.9 175 32.0
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.4e-09 67.4 115 37.4
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.4e-09 67.4 132 38.6
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 1.8e-09 67.0 188 28.7
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.3e-09 66.6 101 43.6
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 6.8e-09 65.1 38 76.3
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 8.8e-09 64.7 46 63.0
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 2.6e-08 63.2 45 62.2
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 3.4e-08 62.8 130 34.6
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 4.8e-07 58.9 55 52.7
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 6.3e-07 58.5 117 33.3
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.1e-06 57.8 90 38.9
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.4e-06 57.4 221 26.7
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 3.1e-06 56.2 51 62.7
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 5.4e-06 55.5 59 45.8


User provided reference genes

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