Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015564 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.1e-81 306.6 154 100.0
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 7.8e-56 220.7 196 64.3
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.4e-49 199.9 227 52.0
EL10Ac3g05001 Beta vulgaris HOM05D003989 ORTHO05D004626 2.8e-29 132.5 196 43.4
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 1.1e-20 104.0 184 35.9
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 3.1e-20 102.4 181 37.0
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 8.4e-18 94.4 181 34.3
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 8.4e-18 94.4 169 37.3
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 2.4e-17 92.8 172 34.9
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 4.2e-17 92.0 177 34.5
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 4.2e-17 92.0 181 32.6
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 5.4e-17 91.7 184 31.5
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 9.3e-17 90.9 184 31.5
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 9.3e-17 90.9 184 31.0
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 9.3e-17 90.9 167 35.3
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 9.3e-17 90.9 174 35.1
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 1.2e-16 90.5 184 32.6
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 1.2e-16 90.5 169 33.7
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 1.2e-16 90.5 174 35.1
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 1.6e-16 90.1 169 35.5
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 2.1e-16 89.7 181 33.1
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 2.1e-16 89.7 167 35.3
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 2.7e-16 89.4 182 33.0
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 2.7e-16 89.4 180 33.9
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 2.7e-16 89.4 174 35.1
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 3.5e-16 89.0 177 34.5
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 3.5e-16 89.0 178 33.7
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 3.5e-16 89.0 169 34.9
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 3.5e-16 89.0 172 34.3
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 3.5e-16 89.0 169 35.5
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 3.5e-16 89.0 167 35.9
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 4.6e-16 88.6 184 33.2
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 6.0e-16 88.2 177 34.5
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 7.9e-16 87.8 184 31.0
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 7.9e-16 87.8 172 34.9
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 1.0e-15 87.4 181 30.9
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 1.0e-15 87.4 177 33.3
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 1.3e-15 87.0 184 31.5
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 1.3e-15 87.0 184 31.5
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 1.3e-15 87.0 181 30.9
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 1.3e-15 87.0 184 31.5
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 1.3e-15 87.0 184 31.5
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 1.7e-15 86.7 169 32.5
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 1.7e-15 86.7 184 31.5
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 1.7e-15 86.7 162 35.8
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 1.7e-15 86.7 169 33.7
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.7e-15 86.7 181 31.5
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 1.7e-15 86.7 174 35.1
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 2.3e-15 86.3 177 33.9
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 3.9e-15 85.5 172 34.9
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 3.9e-15 85.5 167 32.9
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 3.9e-15 85.5 177 34.5
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 3.9e-15 85.5 177 33.3
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 5.1e-15 85.1 177 33.9
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 5.1e-15 85.1 182 32.4
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 5.1e-15 85.1 177 34.5
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 5.1e-15 85.1 177 35.0
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 5.1e-15 85.1 167 32.9
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 5.1e-15 85.1 182 33.0
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 6.6e-15 84.7 181 30.9
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 6.6e-15 84.7 184 31.0
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 6.6e-15 84.7 174 33.3
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 6.6e-15 84.7 174 33.3
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.1e-14 84.0 175 34.9
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 1.1e-14 84.0 177 33.9
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 1.1e-14 84.0 174 33.3
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 1.1e-14 84.0 181 32.0
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 1.5e-14 83.6 184 32.1
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 1.5e-14 83.6 177 32.8
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.5e-14 83.6 184 29.3
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.5e-14 83.6 177 32.8
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 1.5e-14 83.6 167 34.1
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 1.9e-14 83.2 181 30.9
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 1.9e-14 83.2 177 33.3
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 2.5e-14 82.8 166 35.5
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 2.5e-14 82.8 181 32.0
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 3.3e-14 82.4 172 30.2
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 3.3e-14 82.4 172 34.9
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 3.3e-14 82.4 177 32.8
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 3.3e-14 82.4 182 34.1
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 5.6e-14 81.6 184 29.3
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 5.6e-14 81.6 174 33.3
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 5.6e-14 81.6 170 33.5
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 5.6e-14 81.6 170 33.5
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 5.6e-14 81.6 174 32.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 5.6e-14 81.6 172 33.1
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 5.6e-14 81.6 169 31.4
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 7.3e-14 81.3 169 32.5
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 7.3e-14 81.3 177 32.2
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 7.3e-14 81.3 159 34.6
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 7.3e-14 81.3 177 31.6
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 9.6e-14 80.9 169 34.3
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 1.3e-13 80.5 194 28.9
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 1.3e-13 80.5 176 31.8
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 1.6e-13 80.1 178 33.1
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 2.1e-13 79.7 178 33.1
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 2.1e-13 79.7 172 33.7
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 2.1e-13 79.7 169 33.1
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 2.8e-13 79.3 190 32.6
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 2.8e-13 79.3 155 32.3
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 3.6e-13 79.0 185 29.2
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 3.6e-13 79.0 172 32.6
Hund03045 Selenicereus undatus HOM05D003989 ORTHO05D004626 3.6e-13 79.0 170 30.0
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 4.8e-13 78.6 164 31.1
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 4.8e-13 78.6 185 29.2
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 4.8e-13 78.6 172 30.8
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 4.8e-13 78.6 181 28.2
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 4.8e-13 78.6 193 32.1
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 4.8e-13 78.6 177 31.6
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 4.8e-13 78.6 177 31.6
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 6.2e-13 78.2 183 29.5
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 6.2e-13 78.2 176 30.7
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 6.2e-13 78.2 174 31.0
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 6.2e-13 78.2 186 29.6
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 8.1e-13 77.8 159 33.3
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 8.1e-13 77.8 177 32.8
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 1.1e-12 77.4 185 28.1
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 1.1e-12 77.4 180 31.7
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 1.1e-12 77.4 174 32.2
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 1.1e-12 77.4 168 30.4
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.4e-12 77.0 183 32.8
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.4e-12 77.0 183 32.8
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 1.4e-12 77.0 173 30.6
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 1.8e-12 76.6 172 30.8
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 1.8e-12 76.6 177 31.6
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 2.4e-12 76.3 178 31.5
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 2.4e-12 76.3 159 31.4
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 3.1e-12 75.9 170 30.0
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 4.0e-12 75.5 155 32.9
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 5.3e-12 75.1 177 31.6
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 5.3e-12 75.1 157 32.5
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 5.3e-12 75.1 174 32.2
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.2e-11 73.9 183 32.2
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 1.2e-11 73.9 185 29.7
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 1.5e-11 73.6 173 30.6
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.6e-11 72.8 177 30.5
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 3.4e-11 72.4 145 34.5
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 4.5e-11 72.0 154 31.2
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 4.5e-11 72.0 202 28.7
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 4.5e-11 72.0 165 30.9
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 5.8e-11 71.6 173 30.6
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 5.8e-11 71.6 180 30.0
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 9.9e-11 70.9 145 33.8
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 1.7e-10 70.1 167 32.9
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 8.4e-10 67.8 162 30.2
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 1.4e-09 67.0 120 34.2
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 4.2e-09 65.5 174 29.9
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 4.2e-09 65.5 147 32.0
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 2.7e-08 62.8 106 36.8
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 2.7e-08 62.8 199 28.1
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 3.5e-08 62.4 115 33.0
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 4.6e-08 62.0 119 33.6
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 6.0e-08 61.6 121 31.4
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 1.0e-07 60.8 169 27.8
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 3.0e-07 59.3 65 40.0
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 8.7e-07 57.8 56 55.4
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 1.1e-06 57.4 56 51.8
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 7.4e-06 54.7 118 32.2


User provided reference genes

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