Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.9e-281 971.8 492 100.0
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.6e-211 739.6 481 81.9
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 7.4e-193 677.6 492 75.2
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.2e-187 660.2 500 74.6
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 8.5e-173 610.9 491 66.4
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 4.2e-172 608.6 484 68.0
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.4e-167 593.6 487 66.5
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 3.5e-166 589.0 483 66.5
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.1e-164 583.9 483 65.8
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.0e-162 577.4 483 64.6
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.3e-162 576.2 482 65.6
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.5e-161 573.5 473 66.6
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.4e-161 572.4 485 65.8
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.7e-160 570.1 491 64.6
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.7e-160 570.1 471 66.9
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 6.3e-160 568.2 487 64.7
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 2.4e-159 566.2 474 64.1
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 2.0e-158 563.1 446 67.7
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 2.0e-158 563.1 486 63.2
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 2.9e-157 559.3 485 64.1
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 6.6e-157 558.1 485 64.1
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 6.6e-157 558.1 492 62.8
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 8.6e-157 557.8 444 67.3
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 8.6e-157 557.8 468 65.4
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.5e-156 556.2 492 64.2
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 3.3e-156 555.8 466 64.4
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 4.2e-156 555.4 492 64.2
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.2e-155 553.9 466 64.6
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.8e-155 552.7 487 62.8
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 4.7e-155 552.0 487 62.4
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 8.0e-155 551.2 481 63.8
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 1.8e-154 550.1 489 62.8
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 3.0e-154 549.3 471 63.3
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 3.0e-154 549.3 484 64.3
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.0e-154 549.3 475 64.2
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 3.4e-153 545.8 517 59.4
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 3.4e-153 545.8 446 65.9
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 4.4e-153 545.4 447 65.8
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 9.8e-153 544.3 468 63.7
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.3e-152 543.9 488 63.1
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.2e-152 543.1 458 65.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 2.8e-152 542.7 483 62.7
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 4.9e-152 542.0 497 61.6
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 4.9e-152 542.0 497 61.6
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 6.3e-152 541.6 494 63.4
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 8.3e-152 541.2 486 63.8
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 8.3e-152 541.2 482 64.1
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.1e-151 540.8 567 55.6
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.4e-151 540.4 488 62.9
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.4e-151 540.4 482 63.5
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 1.8e-151 540.0 499 62.7
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.8e-151 540.0 488 62.3
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.1e-151 539.3 476 63.2
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.4e-151 538.5 493 61.5
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 9.2e-151 537.7 490 62.4
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 5.9e-150 535.0 482 63.5
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 2.9e-149 532.7 471 62.4
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.9e-149 532.3 489 62.0
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 5.0e-149 531.9 493 61.5
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 6.6e-149 531.6 513 59.6
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 8.6e-149 531.2 485 62.1
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.9e-148 530.0 496 60.5
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 5.6e-148 528.5 487 60.8
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 7.3e-148 528.1 489 61.1
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.1e-147 526.6 443 65.0
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.8e-146 523.5 495 60.2
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 3.1e-146 522.7 510 59.2
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 3.1e-146 522.7 449 64.1
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.2e-145 520.8 450 63.6
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.2e-145 520.8 486 63.0
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.5e-145 520.4 482 61.6
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 4.4e-145 518.8 527 57.3
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 3.7e-144 515.8 476 61.6
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.9e-143 513.5 474 61.6
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 2.4e-143 513.1 485 60.2
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.7e-142 509.6 446 62.3
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 3.9e-141 505.8 484 59.3
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 8.6e-141 504.6 495 59.0
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.5e-140 503.8 437 62.9
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.9e-140 503.4 479 59.9
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.3e-140 502.7 463 60.3
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.3e-140 502.7 463 60.3
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 5.6e-140 501.9 466 60.9
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 7.3e-140 501.5 468 60.3
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.1e-139 500.0 463 59.8
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 3.6e-139 499.2 486 59.7
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 3.6e-139 499.2 486 59.7
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 4.7e-139 498.8 485 60.2
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 8.0e-139 498.0 481 58.4
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.4e-138 497.3 467 60.0
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 2.0e-137 493.4 486 58.4
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.6e-137 493.0 419 64.4
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 4.4e-137 492.3 447 59.1
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 5.8e-137 491.9 486 58.2
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 7.5e-137 491.5 487 58.1
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.0e-133 481.1 473 58.4
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.7e-133 480.3 491 56.2
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 6.6e-133 478.4 484 57.6
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 2.6e-129 466.5 429 59.2
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 6.6e-125 451.8 400 62.2
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.6e-123 447.2 554 49.6
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.2e-122 442.2 446 56.5
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 6.8e-122 441.8 441 53.3
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 5.8e-121 438.7 503 53.5
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.8e-121 438.7 449 55.2
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 9.9e-121 438.0 446 54.3
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.7e-120 437.2 336 71.1
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.9e-120 436.4 446 53.6
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.9e-120 435.6 450 55.6
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.0e-117 427.9 498 51.2
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.7e-117 427.2 377 64.7
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 6.6e-117 425.2 493 52.7
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-115 421.0 458 54.4
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.4e-111 406.8 415 55.7
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.2e-111 406.4 449 53.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 5.4e-111 405.6 445 53.7
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.6e-110 402.5 373 57.1
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.3e-109 400.2 458 50.9
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.9e-108 397.1 453 51.7
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 4.6e-102 375.9 396 53.0
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 5.6e-100 369.0 415 51.1
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.8e-99 366.7 415 50.6
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 6.2e-99 365.5 419 52.0
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.0e-96 358.2 419 52.5
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 3.3e-92 343.2 414 51.0
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.7e-88 330.9 621 38.2
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.6e-83 314.3 387 49.6
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 6.3e-83 312.4 300 59.3
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.5e-81 306.2 440 44.5
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 5.9e-81 305.8 368 50.3
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.4e-74 284.6 356 48.0
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 6.9e-74 282.3 409 42.5
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 3.0e-69 266.9 351 48.4
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 3.8e-64 250.0 306 47.4
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 1.9e-63 247.7 307 48.5
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.6e-62 244.6 325 44.6
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 4.1e-58 229.9 121 92.6
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 9.1e-58 228.8 257 56.0
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.0e-53 215.3 237 54.4
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.5e-47 194.9 192 54.2
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.2e-46 191.8 322 37.3
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.3e-43 181.8 136 72.1
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 7.0e-42 176.0 103 80.6
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 3.6e-38 163.7 160 61.2
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 5.7e-36 156.4 155 61.3
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 1.8e-34 151.4 122 73.0
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 2.0e-25 121.3 147 49.7
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.7e-25 120.9 133 54.9
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.5e-23 112.5 66 86.4
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 3.6e-22 110.5 203 40.4
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 2.3e-21 107.8 161 44.1
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 8.9e-21 105.9 58 89.7
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 2.0e-20 104.8 166 42.2
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 2.7e-17 94.4 82 63.4
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 7.8e-17 92.8 108 50.0
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.0e-16 92.4 96 49.0
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 3.9e-16 90.5 107 47.7
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 4.3e-15 87.0 51 78.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.6e-15 86.7 81 59.3
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 5.6e-15 86.7 236 34.3
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.6e-14 84.0 99 47.5
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.4e-13 82.0 51 78.4
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 8.9e-13 79.3 51 74.5
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.4e-12 77.4 55 69.1
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.9e-12 75.9 69 62.3
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 6.4e-11 73.2 88 54.5
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.4e-10 72.0 51 68.6
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 5.4e-10 70.1 99 41.4
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.0e-09 66.6 35 85.7
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 7.8e-09 66.2 81 54.3
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 8.6e-08 62.8 36 86.1
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 2.8e-06 57.8 65 50.8


User provided reference genes

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