Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 3.1e-187 658.3 328 100.0
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 4.9e-140 501.5 294 85.7
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.1e-123 445.3 302 73.8
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 4.4e-109 398.7 262 71.0
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 9.9e-109 397.5 303 66.0
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 6.4e-108 394.8 303 65.3
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 8.4e-108 394.4 266 71.1
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 8.4e-108 394.4 272 68.4
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.4e-107 392.9 275 66.9
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 3.2e-107 392.5 263 70.0
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 5.4e-107 391.7 262 71.4
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 9.2e-107 391.0 263 69.6
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.1e-106 389.8 299 64.5
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.7e-106 389.4 264 70.8
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 4.6e-106 388.7 265 70.2
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 7.8e-106 387.9 262 71.0
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.7e-105 386.7 305 62.0
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.3e-105 386.3 266 72.2
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.0e-105 386.0 290 64.1
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 3.0e-105 386.0 262 71.8
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 5.1e-105 385.2 262 72.1
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 6.6e-105 384.8 262 70.6
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.1e-104 384.0 265 72.1
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 2.5e-104 382.9 265 71.3
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 3.3e-104 382.5 283 66.1
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 4.3e-104 382.1 262 69.8
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 9.6e-104 380.9 265 68.3
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 2.1e-103 379.8 264 68.6
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.8e-103 379.4 262 71.0
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 8.1e-103 377.9 265 67.9
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.4e-102 376.3 259 68.7
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 3.1e-102 375.9 271 65.3
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 3.1e-102 375.9 259 68.7
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 5.2e-102 375.2 303 62.7
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 6.8e-102 374.8 267 68.9
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 8.9e-102 374.4 256 71.9
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.5e-101 373.6 291 65.6
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.0e-101 373.2 265 69.4
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.6e-101 372.9 283 65.0
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.4e-101 372.1 286 65.0
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.8e-101 371.7 286 65.0
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 5.8e-101 371.7 310 60.3
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 9.9e-101 370.9 274 65.7
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.3e-100 370.5 286 65.4
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.3e-100 370.5 263 67.7
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.7e-100 370.2 265 67.5
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.9e-100 369.4 274 67.2
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 4.9e-100 368.6 263 67.7
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 6.4e-100 368.2 285 63.2
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 8.4e-100 367.9 299 62.5
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.1e-99 367.5 268 66.0
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.9e-99 366.7 238 73.5
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 3.2e-99 365.9 257 68.9
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 1.2e-98 364.0 279 65.2
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.2e-98 364.0 259 67.6
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 2.1e-98 363.2 259 68.3
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 2.1e-98 363.2 259 67.2
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 2.1e-98 363.2 255 69.8
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 3.5e-98 362.5 259 69.1
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 4.6e-98 362.1 259 68.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 6.0e-98 361.7 274 65.3
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 6.0e-98 361.7 266 63.9
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 1.3e-97 360.5 279 64.2
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.3e-97 360.5 262 67.2
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 1.7e-97 360.1 262 65.3
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.3e-97 359.8 274 65.0
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 2.3e-97 359.8 262 67.2
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 3.9e-97 359.0 260 68.5
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 5.1e-97 358.6 262 66.4
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 6.6e-97 358.2 262 63.0
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.1e-96 357.5 296 60.1
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.9e-96 356.7 262 66.0
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.9e-96 356.7 262 66.4
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.9e-96 356.7 213 78.4
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 3.3e-96 355.9 261 62.8
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 4.3e-96 355.5 266 60.9
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 5.6e-96 355.1 265 65.3
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 5.6e-96 355.1 262 66.0
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 9.6e-96 354.4 259 63.7
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 9.6e-96 354.4 264 63.6
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 2.8e-95 352.8 250 70.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 8.1e-95 351.3 275 61.1
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 8.1e-95 351.3 262 63.4
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 1.1e-94 350.9 263 62.0
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 1.1e-94 350.9 263 62.0
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.1e-94 350.9 331 55.0
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 1.4e-94 350.5 269 64.7
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.8e-94 350.1 259 63.7
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 3.1e-94 349.4 263 61.6
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 6.9e-94 348.2 263 61.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.5e-93 347.1 256 63.7
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.5e-93 347.1 260 61.9
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 2.6e-93 346.3 232 71.6
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 4.5e-93 345.5 213 75.6
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 6.4e-92 341.7 238 66.4
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 6.4e-92 341.7 264 61.4
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.9e-91 340.1 264 63.6
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 3.9e-89 332.4 248 62.5
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 6.6e-89 331.6 256 60.2
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.9e-88 330.1 254 63.0
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 2.1e-87 326.6 353 49.9
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 4.8e-87 325.5 318 52.5
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.2e-87 325.1 312 52.6
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 8.1e-87 324.7 292 54.5
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 2.4e-86 323.2 329 52.9
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 2.7e-82 309.7 297 54.2
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 6.0e-82 308.5 224 67.4
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.4e-78 297.4 287 56.4
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 5.3e-78 295.4 279 54.8
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.0e-76 291.2 183 76.0
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 2.9e-76 289.7 200 67.0
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 1.6e-74 283.9 235 56.6
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 1.5e-72 277.3 210 60.5
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 5.0e-68 262.3 269 50.6
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 3.3e-64 249.6 245 50.6
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 3.9e-57 226.1 212 53.8
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 9.4e-51 204.9 244 47.5
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.2e-47 193.7 122 73.8
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.4e-46 191.0 143 65.0
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 4.1e-46 189.5 122 73.8
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.7e-37 160.2 150 53.3
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.5e-29 133.3 83 78.3
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.3e-20 104.8 61 80.3
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.3e-20 104.8 61 80.3
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 6.8e-17 92.4 161 36.6
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 6.8e-17 92.4 124 39.5
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 1.5e-16 91.3 65 67.7
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 2.0e-16 90.9 68 63.2
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.4e-14 84.7 114 48.2
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 4.1e-14 83.2 160 33.8
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 9.2e-14 82.0 131 35.9
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 2.0e-13 80.9 143 33.6
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 2.7e-13 80.5 131 33.6
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.7e-13 80.5 199 30.7
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 2.7e-13 80.5 176 31.8
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 4.6e-13 79.7 131 35.1
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 4.6e-13 79.7 131 36.6
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 5.9e-13 79.3 131 34.4
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 7.8e-13 79.0 176 31.8
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 7.8e-13 79.0 176 31.8
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 7.8e-13 79.0 186 29.0
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 1.3e-12 78.2 131 34.4
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 1.3e-12 78.2 131 33.6
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.7e-12 77.8 143 32.9
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.7e-12 77.8 131 34.4
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.3e-12 77.4 145 33.8
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 2.3e-12 77.4 132 34.8
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.3e-12 77.4 131 35.1
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 3.0e-12 77.0 176 31.2
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 3.0e-12 77.0 131 34.4
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 3.9e-12 76.6 131 34.4
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 5.0e-12 76.3 215 28.8
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 6.6e-12 75.9 131 34.4
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 6.6e-12 75.9 131 33.6
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 8.6e-12 75.5 186 30.1
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 8.6e-12 75.5 131 33.6
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 8.6e-12 75.5 131 34.4
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 8.6e-12 75.5 131 32.8
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 1.1e-11 75.1 186 29.6
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.1e-11 75.1 210 31.4
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.5e-11 74.7 116 37.9
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 5.6e-11 72.8 169 30.2
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.2e-10 71.6 176 30.7
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.6e-10 71.2 251 27.1
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.6e-10 71.2 123 34.1
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 2.8e-10 70.5 131 32.8
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 1.0e-09 68.6 131 30.5
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.3e-09 67.4 221 24.9
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 4.0e-09 66.6 176 25.0
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 5.2e-09 66.2 90 37.8
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 5.2e-09 66.2 123 31.7
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 1.5e-08 64.7 132 30.3
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 5.8e-08 62.8 59 52.5
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 5.8e-08 62.8 118 33.1
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 7.5e-08 62.4 90 36.7
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.5e-08 62.4 251 25.5
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.7e-07 61.2 96 36.5
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 3.7e-07 60.1 131 29.8
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.4e-06 57.4 138 29.7
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 3.2e-06 57.0 133 30.8


User provided reference genes

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