Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 0.0e+00 1360.5 719 100.0
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.2e-303 1046.2 600 93.7
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 2.7e-228 795.8 626 67.3
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 7.5e-194 681.4 628 58.1
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 4.9e-193 678.7 593 59.4
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 6.3e-193 678.3 610 58.0
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 6.3e-193 678.3 606 59.1
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.4e-192 677.2 615 59.2
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 7.0e-192 674.9 610 59.7
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.8e-188 662.9 594 58.8
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 2.3e-187 659.8 593 58.2
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.5e-186 657.1 591 58.0
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 4.1e-184 649.0 598 56.5
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.7e-182 643.7 595 56.1
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 3.0e-182 642.9 589 57.7
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.5e-181 640.6 589 57.6
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 2.1e-180 636.7 628 54.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.0e-179 632.5 604 54.8
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 4.0e-179 632.5 609 54.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 3.7e-177 625.9 586 55.6
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.1e-176 624.4 594 56.2
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.4e-176 624.0 614 55.0
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 1.9e-176 623.6 599 54.6
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 3.2e-176 622.9 589 55.5
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 7.1e-176 621.7 588 56.1
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 7.1e-176 621.7 588 56.1
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.6e-175 620.5 606 54.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.1e-175 620.2 594 54.9
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 3.5e-175 619.4 588 56.1
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 4.6e-175 619.0 597 54.9
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 2.3e-174 616.7 581 54.7
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 3.0e-174 616.3 617 52.7
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.9e-174 615.9 586 55.8
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 5.1e-174 615.5 591 55.7
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.1e-174 615.5 587 54.3
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 2.5e-173 613.2 587 54.2
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 2.5e-173 613.2 598 55.9
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 3.3e-173 612.8 635 52.9
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 4.3e-173 612.5 588 55.3
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 5.6e-173 612.1 589 55.2
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 9.5e-173 611.3 633 53.4
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 1.2e-172 610.9 597 54.8
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 2.8e-172 609.8 474 67.3
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 1.1e-171 607.8 648 55.2
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.4e-171 607.4 613 52.4
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.8e-171 607.1 613 52.7
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 8.9e-171 604.7 589 55.3
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.2e-170 604.4 587 53.5
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.5e-170 604.0 600 54.0
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 1.5e-170 604.0 591 55.3
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 2.0e-170 603.6 593 55.1
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 2.0e-170 603.6 588 54.9
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.6e-170 603.2 600 53.7
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 5.8e-170 602.1 592 53.9
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 5.8e-170 602.1 597 53.6
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.3e-169 600.9 589 54.5
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.2e-169 600.1 604 53.3
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.9e-169 599.7 610 53.1
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.7e-169 599.4 582 53.4
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.1e-168 597.8 613 52.2
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 2.4e-168 596.7 530 58.3
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.2e-168 596.3 606 53.8
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 9.2e-168 594.7 591 54.3
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.2e-167 594.3 525 60.6
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 2.7e-167 593.2 588 53.6
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.7e-167 593.2 525 60.4
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 1.0e-166 591.3 589 54.0
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 3.0e-166 589.7 598 53.2
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 2.8e-164 583.2 586 53.8
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 3.1e-163 579.7 606 51.8
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 4.0e-163 579.3 635 50.2
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 5.2e-163 578.9 592 50.7
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.5e-162 577.4 586 53.2
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 2.2e-161 573.5 619 51.9
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.4e-160 570.9 531 56.7
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.7e-158 563.9 535 55.3
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 2.4e-155 553.5 633 49.1
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 2.0e-154 550.4 611 50.6
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 1.9e-152 543.9 531 55.0
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 4.2e-152 542.7 601 48.8
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 5.4e-152 542.3 547 53.6
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.1e-151 540.4 585 49.6
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.1e-149 534.6 501 55.3
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 2.1e-148 530.4 604 48.2
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.9e-147 525.4 553 51.5
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 2.6e-146 523.5 532 53.2
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.6e-143 514.2 587 50.8
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.5e-141 507.7 576 50.5
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.3e-141 506.1 509 53.4
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 4.8e-140 502.7 590 46.8
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 8.1e-140 501.9 600 47.0
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.4e-139 501.1 448 58.3
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 2.6e-138 496.9 599 48.2
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 7.4e-125 452.2 440 55.9
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 7.7e-122 442.2 428 55.6
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 3.4e-114 416.8 589 43.6
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 7.0e-107 392.5 363 56.7
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.2e-103 381.7 373 54.4
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.7e-103 380.6 568 41.9
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 7.2e-96 355.9 440 46.6
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.2e-82 312.0 598 32.8
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.0e-81 308.9 609 31.5
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.7e-81 308.1 392 44.6
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 3.3e-80 303.9 388 45.9
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 3.6e-71 273.9 587 31.9
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 4.0e-70 270.4 510 33.7
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 2.5e-64 251.1 489 37.8
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 2.5e-64 251.1 489 37.8
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.6e-58 231.9 352 42.9
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.5e-56 225.3 186 62.9
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.8e-54 218.4 218 58.7
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 2.0e-53 214.9 355 41.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 3.5e-50 204.1 226 48.2
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.2e-42 179.1 404 29.5
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 3.4e-37 161.0 238 43.3
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 4.5e-37 160.6 238 43.3
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.4e-35 155.6 131 61.1
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.2e-35 154.5 130 63.8
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 3.0e-33 147.9 165 49.1
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.9e-32 145.2 142 53.5
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 4.8e-31 140.6 166 46.4
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.9e-28 131.3 412 28.6
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.3e-27 126.3 381 30.7
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 9.6e-24 116.3 567 24.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 3.7e-23 114.4 147 43.5
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.8e-22 112.1 153 39.9
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 4.5e-21 107.5 127 45.7
AUR62033771 Chenopodium quinoa HOM05D007772 ORTHO05D009623 1.0e-20 106.3 86 62.8
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.1e-19 102.8 301 29.2
AUR62030134 Chenopodium quinoa HOM05D000004 ORTHO05D000378 2.5e-19 101.7 87 57.5
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 5.1e-17 94.0 132 37.9
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.2e-12 78.6 56 67.9
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 2.9e-12 78.2 88 52.3
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 3.2e-11 74.7 68 57.4
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.2e-11 74.7 114 39.5
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 7.2e-11 73.6 73 54.8
AUR62042108 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.6e-10 72.4 46 84.8
EL10Ac7g17316 Beta vulgaris HOM05D007772 ORTHO05D009623 2.1e-10 72.0 84 44.0
EL10Ac2g03182 Beta vulgaris HOM05D007772 ORTHO05D009623 4.6e-10 70.9 82 41.5
EL10Ac6g13989 Beta vulgaris HOM05D007772 ORTHO05D009623 4.6e-10 70.9 76 48.7
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 6.1e-10 70.5 138 31.2
EL10Ac4g09365 Beta vulgaris HOM05D007772 ORTHO05D009623 3.0e-09 68.2 85 44.7
EL10Ac4g09709 Beta vulgaris HOM05D007772 ORTHO05D009623 3.9e-09 67.8 81 43.2
AUR62026569 Chenopodium quinoa HOM05D007772 ORTHO05D009623 3.9e-09 67.8 89 40.4
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 3.9e-09 67.8 85 42.4
EL10Ac4g07778 Beta vulgaris HOM05D007772 ORTHO05D009623 6.7e-09 67.0 89 42.7
AUR62026136 Chenopodium quinoa HOM05D007772 ORTHO05D009623 8.7e-09 66.6 93 37.6
Ah.15g097960 Amaranthus hybridus HOM05D007772 ORTHO05D009623 1.5e-08 65.9 76 40.8
EL10Ac4g09079 Beta vulgaris HOM05D025480 ORTHO05D090192 1.5e-08 65.9 77 37.7
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.5e-08 65.1 74 44.6
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.5e-08 65.1 76 47.4
EL10Ac1g01706 Beta vulgaris HOM05D007772 ORTHO05D009623 4.3e-08 64.3 82 37.8
EL10Ac3g05324 Beta vulgaris HOM05D007772 ORTHO05D009623 4.3e-08 64.3 76 39.5
EL10Ac7g17421 Beta vulgaris HOM05D007772 ORTHO05D009623 4.3e-08 64.3 85 38.8
AUR62032358 Chenopodium quinoa HOM05D000691 ORTHO05D000378 4.3e-08 64.3 75 40.0
EL10Ac6g13973 Beta vulgaris HOM05D007772 ORTHO05D009623 5.7e-08 63.9 85 41.2
EL10Ac8g18526 Beta vulgaris HOM05D007772 ORTHO05D009623 5.7e-08 63.9 85 38.8
EL10Ac1g02213 Beta vulgaris HOM05D007772 ORTHO05D009623 7.4e-08 63.5 76 39.5
EL10As7g23780 Beta vulgaris HOM05D007772 ORTHO05D009623 7.4e-08 63.5 85 42.4
AUR62034240 Chenopodium quinoa HOM05D003035 ORTHO05D009623 9.7e-08 63.2 84 42.9
EL10Ac5g12112 Beta vulgaris HOM05D007772 ORTHO05D009623 2.8e-07 61.6 83 37.3
EL10Ac8g19647 Beta vulgaris HOM05D007772 ORTHO05D009623 2.8e-07 61.6 83 37.3
EL10Ac3g06392 Beta vulgaris HOM05D007772 ORTHO05D009623 3.7e-07 61.2 82 39.0
EL10Ac4g08830 Beta vulgaris HOM05D007772 ORTHO05D009623 4.8e-07 60.8 83 37.3
EL10Ac7g17241 Beta vulgaris HOM05D007772 ORTHO05D009623 4.8e-07 60.8 80 41.2
EL10Ac8g20480 Beta vulgaris HOM05D007772 ORTHO05D009623 4.8e-07 60.8 87 34.5
EL10Ac8g20286 Beta vulgaris HOM05D007772 ORTHO05D009623 6.3e-07 60.5 76 43.4
AUR62007756 Chenopodium quinoa HOM05D007772 ORTHO05D009623 6.3e-07 60.5 78 37.2
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 8.2e-07 60.1 47 59.6
EL10Ac2g03865 Beta vulgaris HOM05D007772 ORTHO05D009623 1.4e-06 59.3 83 34.9
EL10Ac4g08706 Beta vulgaris HOM05D007772 ORTHO05D009623 1.4e-06 59.3 85 38.8
EL10Ac5g12346 Beta vulgaris HOM05D007772 ORTHO05D009623 1.4e-06 59.3 80 40.0
EL10Ac3g07225 Beta vulgaris HOM05D007772 ORTHO05D009623 1.8e-06 58.9 80 37.5
EL10Ac3g05989 Beta vulgaris HOM05D007772 ORTHO05D009623 2.4e-06 58.5 86 34.9
EL10Ac7g17753 Beta vulgaris HOM05D007772 ORTHO05D009623 3.1e-06 58.2 74 39.2
EL10Ac8g19902 Beta vulgaris HOM05D007772 ORTHO05D009623 3.1e-06 58.2 78 38.5
EL10Ac5g12136 Beta vulgaris HOM05D007772 ORTHO05D009623 5.3e-06 57.4 76 42.1
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 5.3e-06 57.4 82 39.0
AUR62003191 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.3e-06 57.4 74 32.4
EL10Ac2g03222 Beta vulgaris HOM05D007772 ORTHO05D009623 6.9e-06 57.0 92 39.1
EL10Ac9g22525 Beta vulgaris HOM05D007772 ORTHO05D009623 6.9e-06 57.0 88 37.5
EL10Ac5g12308 Beta vulgaris HOM05D007772 ORTHO05D009623 9.1e-06 56.6 74 45.9
EL10Ac8g18627 Beta vulgaris HOM05D007772 ORTHO05D009623 9.1e-06 56.6 82 34.1
EL10Ac9g22254 Beta vulgaris HOM05D007772 ORTHO05D009623 9.1e-06 56.6 99 32.3
AUR62015771 Chenopodium quinoa HOM05D007772 ORTHO05D009623 9.1e-06 56.6 86 32.6
AUR62031346 Chenopodium quinoa HOM05D007772 ORTHO05D009623 9.1e-06 56.6 83 39.8


User provided reference genes

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