Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.0e-143 513.5 279 100.0
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 8.3e-133 477.2 292 90.8
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.1e-113 413.7 293 79.9
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 7.3e-113 411.0 293 77.1
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 9.0e-95 350.9 372 57.0
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.9e-89 333.2 292 65.1
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 5.7e-89 331.6 295 64.7
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 3.4e-86 322.4 284 64.4
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 4.5e-86 322.0 294 63.9
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 4.5e-86 322.0 300 64.3
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 7.6e-86 321.2 295 64.1
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.0e-85 320.9 295 64.4
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.0e-85 320.9 296 63.5
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.0e-85 320.9 294 63.6
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.2e-85 319.7 284 64.1
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 8.5e-85 317.8 289 63.3
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.1e-84 317.4 300 63.7
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 4.2e-84 315.5 300 62.3
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 5.5e-84 315.1 299 62.9
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 1.8e-82 310.1 295 63.4
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 3.0e-82 309.3 295 63.1
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 8.7e-82 307.8 282 63.1
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.1e-81 307.4 259 68.0
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 1.5e-81 307.0 296 61.8
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.5e-81 307.0 294 62.6
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.9e-81 306.6 299 60.2
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 2.5e-81 306.2 300 62.3
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.5e-81 306.2 298 61.7
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 4.3e-81 305.4 293 61.4
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.3e-80 303.9 298 61.1
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 1.3e-80 303.9 294 62.6
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 2.2e-80 303.1 296 61.5
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 4.8e-80 302.0 296 60.5
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 8.2e-80 301.2 286 62.6
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 1.1e-79 300.8 293 61.8
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.4e-79 300.4 262 65.6
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.4e-79 300.4 294 60.9
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.8e-79 300.1 294 62.6
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 5.3e-79 298.5 296 61.5
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.2e-78 297.4 298 60.7
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-78 297.4 292 60.3
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.5e-78 297.0 298 59.7
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.5e-78 297.0 292 60.6
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.6e-78 296.2 292 60.3
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.6e-78 296.2 277 62.1
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.6e-78 296.2 297 59.6
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.7e-78 294.7 292 59.9
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.7e-77 293.5 282 61.3
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.2e-77 293.1 292 59.6
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 6.5e-77 291.6 292 59.2
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 8.5e-77 291.2 295 60.0
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.1e-76 290.8 294 59.2
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.9e-76 290.0 298 58.4
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 5.5e-76 288.5 304 57.9
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.2e-75 287.3 297 58.2
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 6.1e-75 285.0 297 58.6
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.4e-74 283.9 300 57.7
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 3.0e-74 282.7 325 55.4
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 8.8e-74 281.2 303 56.8
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.1e-73 280.8 295 58.0
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.5e-73 280.4 332 53.0
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.5e-73 280.4 296 56.4
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.6e-73 279.6 292 57.9
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.6e-73 279.6 292 57.9
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 2.6e-73 279.6 292 57.9
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 3.3e-73 279.3 292 58.2
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 3.3e-73 279.3 292 58.2
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 4.4e-73 278.9 296 58.8
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 5.7e-73 278.5 296 57.1
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 5.7e-73 278.5 301 56.8
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 7.4e-73 278.1 294 58.8
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 7.4e-73 278.1 293 58.7
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.2e-72 276.6 299 57.2
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 3.7e-72 275.8 277 56.0
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 4.8e-72 275.4 257 59.9
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 6.3e-72 275.0 294 56.5
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 8.2e-72 274.6 294 56.5
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 3.1e-71 272.7 386 46.9
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 4.1e-71 272.3 299 55.9
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.5e-70 270.4 251 61.0
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.0e-70 270.0 255 60.8
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.0e-70 270.0 297 54.5
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 7.7e-70 268.1 306 55.6
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.0e-69 267.7 259 61.8
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.0e-69 267.7 294 54.8
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.3e-69 267.3 360 48.9
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.7e-69 266.9 278 57.6
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 8.5e-69 264.6 293 55.3
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.9e-68 263.5 262 59.5
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 2.5e-68 263.1 271 57.9
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 4.2e-68 262.3 297 56.2
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 5.5e-68 261.9 297 56.2
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.6e-67 259.2 263 56.7
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 6.1e-67 258.5 311 53.7
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 7.9e-67 258.1 324 52.8
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.4e-66 257.3 213 69.0
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.1e-65 254.2 271 57.6
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 4.4e-65 252.3 305 54.4
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.1e-63 247.7 391 44.2
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 7.7e-62 241.5 298 54.4
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 3.8e-61 239.2 299 52.8
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 2.1e-59 233.4 297 51.5
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 5.2e-58 228.8 238 59.2
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 5.2e-58 228.8 249 53.8
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 5.2e-58 228.8 222 59.5
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.3e-56 224.2 272 52.6
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 5.0e-53 212.2 199 64.8
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 6.1e-51 205.3 230 54.8
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 8.3e-48 194.9 164 64.6
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.4e-47 194.1 299 47.5
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 1.7e-45 187.2 154 70.8
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.5e-44 184.1 301 45.8
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 2.8e-43 179.9 170 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.3e-42 176.8 256 43.4
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 5.2e-42 175.6 256 43.0
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.3e-40 171.0 240 45.4
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 6.3e-40 168.7 273 41.8
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 2.3e-37 160.2 144 66.0
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 3.3e-36 156.4 162 56.2
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 4.3e-36 156.0 220 42.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.8e-34 150.6 242 40.9
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 5.9e-30 135.6 116 66.4
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.5e-28 131.0 229 40.6
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 9.5e-28 128.3 180 51.7
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 5.8e-25 119.0 123 56.9
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 7.5e-25 118.6 122 59.8
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 4.9e-24 115.9 233 34.3
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 1.9e-23 114.0 118 52.5
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 2.4e-23 113.6 139 53.2
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 2.0e-22 110.5 130 49.2
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.3e-21 107.8 163 44.2
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.9e-20 104.0 69 81.2
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 2.5e-20 103.6 105 53.3
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 2.5e-20 103.6 105 53.3
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 1.4e-18 97.8 105 51.4
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.7e-16 89.7 99 56.6
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.7e-13 80.9 62 66.1
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 5.8e-09 65.9 49 65.3
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 5.8e-09 65.9 49 65.3
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 5.8e-09 65.9 49 65.3
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 5.8e-09 65.9 49 65.3
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 6.0e-06 55.8 196 28.1


User provided reference genes

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