Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 2121.3 1073 100.0
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1696.4 1082 80.2
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1559.7 1083 73.8
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1494.9 1081 70.9
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1293.5 1085 61.7
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1291.6 1084 62.5
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1290.0 1095 62.4
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1247.3 1096 60.1
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1240.3 1076 60.2
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1239.2 1080 58.9
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1231.1 1091 59.9
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1225.3 1078 60.8
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1223.8 1089 58.7
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1223.4 1082 59.3
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1222.2 1087 59.9
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1222.2 1090 58.4
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1222.2 1093 59.5
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1218.4 1080 59.1
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1217.6 1076 59.2
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1217.6 1082 59.2
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1215.7 640 95.5
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1213.4 1122 58.5
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1212.2 1090 59.3
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1206.0 1098 58.7
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1202.2 1078 58.6
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1201.4 1093 58.4
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1200.7 1077 58.6
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1199.5 1080 58.1
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1199.1 1077 58.4
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1197.6 1089 57.9
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1197.6 1077 58.3
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1196.8 1079 57.9
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1196.4 1077 58.2
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1195.6 1077 58.0
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1194.1 1078 58.3
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1191.0 1077 57.9
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1190.6 1078 58.1
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1188.7 1090 58.5
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1187.9 1078 58.0
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1185.6 1091 57.7
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1184.1 1079 57.7
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1182.9 1098 57.7
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1177.9 1084 57.7
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1177.9 1095 57.4
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1177.9 1091 56.9
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1177.2 1087 57.6
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1176.0 1092 57.1
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1167.1 1081 57.9
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1165.6 1087 56.3
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1165.2 1086 56.5
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1161.4 1088 57.2
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1159.8 1084 56.9
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1156.4 1082 57.3
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1154.4 1076 55.8
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1153.7 1077 56.8
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1149.0 1090 55.7
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1146.0 1085 56.8
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1141.7 1086 56.4
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1132.5 1080 56.8
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1128.2 1080 56.4
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1126.3 1093 55.8
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1125.2 1089 56.5
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1120.9 1019 56.9
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1119.4 1082 55.3
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1098.6 1091 54.9
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1091.3 1029 55.9
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1087.4 1103 53.5
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1083.2 1076 54.5
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1082.0 1104 54.1
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1079.7 1084 53.7
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 6.6e-311 1070.8 1082 53.3
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 5.6e-310 1067.8 1095 54.5
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 2.8e-309 1065.4 1090 52.8
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 1.8e-308 1062.8 1089 52.3
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 3.4e-307 1058.5 1101 54.2
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 7.5e-307 1057.4 1086 52.6
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 1.7e-306 1056.2 1083 52.0
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 2.2e-306 1055.8 1084 52.5
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 4.9e-306 1054.7 1083 52.2
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 1.4e-300 1036.6 1084 53.2
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 2.3e-300 1035.8 1079 51.0
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 4.0e-300 1035.0 1083 51.5
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 5.2e-300 1034.6 1086 51.3
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 5.2e-300 1034.6 1083 51.5
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 5.2e-300 1034.6 1085 51.4
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 1.4e-297 1026.5 1129 50.7
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 1.2e-293 1013.4 1099 52.1
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 1.3e-287 993.4 1080 51.5
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 7.3e-286 987.6 1064 51.5
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-260 904.0 1106 46.7
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 4.6e-256 888.6 1049 47.9
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 4.2e-249 865.5 859 55.1
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 1.3e-239 833.9 1077 45.4
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 4.3e-238 828.9 760 55.5
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 3.2e-233 812.8 638 63.2
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 2.6e-230 803.1 1084 43.5
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.7e-229 800.4 643 63.0
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 2.8e-213 746.5 645 60.6
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.1e-201 708.0 1102 40.5
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 3.0e-199 699.9 1181 37.3
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 5.7e-198 695.7 1163 37.9
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 7.8e-195 685.3 642 56.7
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 7.8e-195 685.3 560 63.8
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 4.7e-184 649.4 558 60.4
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 6.8e-175 619.0 704 48.3
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 1.9e-172 610.9 555 58.9
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 5.4e-164 582.8 640 49.2
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 3.8e-149 533.5 464 61.0
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.9e-140 504.6 462 56.9
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.1e-127 460.7 433 57.5
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 5.7e-121 439.9 431 57.3
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 5.6e-76 290.4 406 42.4
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 2.8e-75 288.1 1542 23.6
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.1e-71 276.2 462 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 6.2e-67 260.4 547 32.9
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.4e-66 259.2 278 50.7
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-58 232.3 555 30.6
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 5.2e-58 230.7 372 41.7
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-52 213.0 482 31.1
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 8.7e-45 186.8 556 27.5
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-42 179.5 511 29.7
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 4.4e-41 174.5 232 43.1
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 2.1e-38 165.6 241 41.9
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-33 149.8 172 44.8
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-33 149.1 204 46.1
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 4.5e-33 147.9 361 33.5
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-31 142.9 145 51.7
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-31 142.9 145 51.7
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 2.5e-28 132.1 157 46.5
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 2.5e-28 132.1 155 47.1
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 4.0e-26 124.8 112 53.6
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-24 118.6 210 37.1
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 4.3e-20 104.8 58 84.5
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 9.6e-20 103.6 79 63.3
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-19 102.8 120 46.7
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 6.5e-16 90.9 52 78.8
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 2.1e-14 85.9 237 27.0
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-13 83.6 57 64.9
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 8.2e-11 73.9 220 26.4
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 8.2e-11 73.9 220 26.4
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 1.1e-07 63.5 61 44.3
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.5e-07 62.4 84 35.7
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 1.2e-06 60.1 90 36.7


User provided reference genes

Program Settings