Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.1e-129 465.7 235 100.0
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 3.9e-75 285.4 240 65.4
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.9e-75 285.4 172 82.6
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.2e-63 247.3 170 72.4
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.6e-63 246.1 170 72.4
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 5.9e-63 245.0 180 68.9
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 7.7e-63 244.6 170 72.9
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.9e-62 242.7 170 71.2
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.9e-62 242.7 170 71.2
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 3.8e-62 242.3 192 66.1
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 3.8e-62 242.3 181 68.0
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 8.5e-62 241.1 168 70.8
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.1e-61 240.7 169 71.6
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 2.5e-61 239.6 170 71.2
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 4.2e-61 238.8 170 70.0
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 5.5e-61 238.4 170 70.6
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 5.5e-61 238.4 170 71.2
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 5.5e-61 238.4 170 68.2
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 7.2e-61 238.0 175 69.1
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.6e-60 236.9 197 62.9
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.6e-60 236.9 175 68.0
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 3.6e-60 235.7 170 70.6
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 7.9e-60 234.6 196 62.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 7.9e-60 234.6 172 67.4
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.0e-59 234.2 245 55.5
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.0e-59 234.2 190 65.3
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.4e-59 233.8 172 69.2
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.8e-59 233.4 169 71.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.3e-59 233.0 200 61.5
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.9e-59 232.3 209 60.3
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 3.9e-59 232.3 172 67.4
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 5.1e-59 231.9 170 69.4
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 5.1e-59 231.9 193 62.7
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 3.3e-58 229.2 171 68.4
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 3.3e-58 229.2 171 68.4
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 4.3e-58 228.8 203 60.1
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 4.3e-58 228.8 180 68.3
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 7.4e-58 228.0 172 68.6
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 7.4e-58 228.0 205 60.5
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 9.7e-58 227.6 195 62.6
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.2e-57 226.5 195 61.5
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.8e-57 226.1 192 60.4
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 2.8e-57 226.1 196 62.8
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 3.7e-57 225.7 168 67.9
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 6.3e-57 224.9 170 67.6
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 6.3e-57 224.9 165 68.5
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 8.2e-57 224.6 166 68.7
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 8.2e-57 224.6 168 67.9
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.1e-56 224.2 169 67.5
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.1e-56 224.2 197 61.4
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.1e-56 224.2 197 61.4
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.4e-56 223.8 168 67.3
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.8e-56 223.4 172 66.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.1e-56 222.6 212 56.6
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 4.1e-56 222.2 166 66.9
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.2e-55 220.7 169 65.7
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.0e-55 219.9 170 65.9
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.6e-55 219.5 169 66.3
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.5e-55 218.8 166 67.5
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 4.5e-55 218.8 170 66.5
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.3e-54 217.2 203 58.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 5.0e-54 215.3 170 64.1
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.5e-54 214.9 170 64.7
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.1e-53 214.2 221 55.2
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.2e-52 210.7 174 62.6
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 4.7e-52 208.8 172 59.9
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.9e-52 208.0 170 61.2
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.4e-51 207.2 113 88.5
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.8e-51 206.8 170 63.5
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.1e-50 204.1 167 62.3
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.7e-50 201.8 170 61.8
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 5.7e-50 201.8 168 63.1
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.7e-49 200.3 116 82.8
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.8e-49 198.7 165 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 5.3e-48 195.3 165 58.2
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 7.0e-48 194.9 170 57.6
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 9.1e-48 194.5 171 58.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.6e-47 193.7 168 57.7
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 3.5e-47 192.6 167 58.1
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.9e-47 191.8 174 55.7
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.3e-46 190.7 112 83.0
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.7e-46 190.3 191 56.5
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.2e-46 189.9 167 58.1
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 5.0e-46 188.7 112 80.4
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 6.5e-46 188.3 171 57.9
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 6.5e-46 188.3 118 78.0
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.5e-45 187.2 167 58.7
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.5e-45 186.4 118 77.1
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 3.2e-45 186.0 113 77.0
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 3.2e-45 186.0 170 60.0
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 5.5e-45 185.3 118 75.4
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 5.5e-45 185.3 167 56.3
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.5e-45 185.3 169 55.0
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 7.2e-45 184.9 112 80.4
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 9.4e-45 184.5 194 56.2
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 1.6e-44 183.7 112 80.4
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.1e-44 183.3 115 79.1
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 2.7e-44 183.0 110 80.0
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 4.7e-44 182.2 173 56.1
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.0e-43 181.0 167 56.3
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 2.3e-43 179.9 113 77.0
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.0e-43 179.5 114 75.4
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 4.0e-43 179.1 186 53.2
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 6.7e-43 178.3 168 55.4
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.0e-42 176.8 115 73.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 2.6e-42 176.4 113 74.3
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.3e-42 176.0 110 76.4
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 7.5e-42 174.9 113 74.3
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 7.5e-42 174.9 168 57.1
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 4.8e-41 172.2 114 71.9
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.1e-40 169.1 167 52.1
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.0e-39 166.8 169 53.8
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.5e-39 166.0 167 51.5
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 5.9e-39 165.2 143 60.1
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 2.2e-38 163.3 172 56.4
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.1e-37 161.0 170 53.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.9e-37 160.2 167 50.3
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 2.5e-37 159.8 110 68.2
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 3.2e-37 159.5 119 64.7
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 2.7e-36 156.4 181 48.6
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.8e-35 153.7 167 50.3
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 4.0e-35 152.5 163 50.9
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 6.8e-35 151.8 103 68.9
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.7e-33 147.1 130 55.4
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.7e-33 147.1 78 87.2
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.4e-32 144.1 110 61.8
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.4e-32 144.1 98 70.4
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.8e-32 143.7 228 44.7
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.4e-32 143.3 208 47.1
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.6e-31 140.6 116 65.5
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 9.5e-29 131.3 183 43.7
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 3.0e-27 126.3 113 61.9
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 6.8e-27 125.2 109 63.3
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 8.3e-25 118.2 72 79.2
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.1e-24 116.3 168 42.9
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 9.2e-24 114.8 81 70.4
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 7.7e-23 111.7 162 44.4
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.0e-22 111.3 101 63.4
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 6.6e-22 108.6 70 72.9
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 4.3e-21 105.9 69 73.9
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.6e-21 105.5 71 70.4
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.1e-20 103.6 120 52.5
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.7e-20 102.4 68 64.7
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.0e-19 101.3 98 54.1
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.4e-19 100.9 119 51.3
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 2.0e-15 87.0 87 52.9
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.0e-14 84.7 55 69.1
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.7e-14 84.0 164 34.8
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 3.6e-12 76.3 51 72.5
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 8.0e-12 75.1 85 49.4
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 3.4e-10 69.7 37 83.8
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 9.8e-10 68.2 37 78.4
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.3e-09 67.8 47 61.7
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.7e-09 67.4 65 53.8
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 6.4e-09 65.5 39 71.8
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 6.4e-09 65.5 60 55.0
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 8.3e-09 65.1 72 48.6
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.9e-08 63.9 37 78.4
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 2.4e-08 63.5 92 46.7
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.4e-08 63.5 57 56.1
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 5.4e-08 62.4 37 73.0
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 7.0e-08 62.0 37 75.7
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 9.2e-08 61.6 79 46.8
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.2e-07 61.2 104 38.5
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.6e-07 60.8 37 70.3
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 4.6e-07 59.3 37 67.6
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 6.6e-06 55.5 37 67.6


User provided reference genes

Program Settings