Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 0.0e+00 1275.0 658 100.0
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 0.0e+00 1259.6 658 98.8
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1163.3 651 91.6
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1152.5 656 89.6
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 4.5e-302 1040.8 652 80.5
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 5.8e-302 1040.4 648 81.9
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 8.7e-298 1026.5 651 79.4
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-297 1025.0 651 80.2
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 7.4e-297 1023.5 657 79.5
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 3.7e-296 1021.1 644 79.7
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 1.1e-295 1019.6 646 79.9
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 2.0e-294 1015.4 646 79.1
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 1.3e-293 1012.7 653 77.9
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 2.9e-293 1011.5 655 78.8
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 3.8e-293 1011.1 646 79.4
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 4.9e-293 1010.7 646 79.4
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 4.9e-293 1010.7 646 79.4
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 6.5e-293 1010.4 656 78.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 8.4e-293 1010.0 651 79.4
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 1.9e-292 1008.8 645 79.2
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 4.2e-292 1007.7 652 77.8
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 2.1e-291 1005.4 652 77.3
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 2.3e-290 1001.9 645 78.8
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 3.0e-290 1001.5 647 78.1
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 3.9e-290 1001.1 647 77.7
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 1.1e-289 999.6 651 77.3
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 1.1e-289 999.6 651 77.3
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 1.1e-289 999.6 650 77.7
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 1.5e-289 999.2 658 77.7
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 1.5e-289 999.2 650 76.9
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 1.5e-289 999.2 655 76.3
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 2.5e-289 998.4 648 79.0
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 1.3e-288 996.1 653 76.9
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 1.6e-288 995.7 651 77.0
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 2.8e-288 995.0 662 76.4
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 4.8e-288 994.2 655 75.9
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 4.8e-288 994.2 651 76.8
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 8.2e-288 993.4 651 77.7
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 8.2e-288 993.4 655 76.9
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 1.5e-286 989.2 647 77.0
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 1.5e-286 989.2 655 76.6
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 2.0e-286 988.8 650 77.2
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 2.0e-286 988.8 655 76.6
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 2.0e-286 988.8 655 76.8
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 2.0e-286 988.8 649 75.8
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 2.6e-286 988.4 651 76.3
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 2.6e-286 988.4 655 76.2
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 5.8e-286 987.3 650 77.4
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 7.6e-286 986.9 652 77.3
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 1.0e-285 986.5 650 77.4
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 1.0e-285 986.5 655 76.8
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 1.7e-285 985.7 650 77.7
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 1.7e-285 985.7 650 76.3
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 2.9e-285 984.9 656 76.7
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 3.8e-285 984.6 649 78.0
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 6.5e-285 983.8 650 77.8
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 8.4e-285 983.4 655 76.2
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 1.4e-284 982.6 648 76.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 2.5e-284 981.9 656 76.1
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 9.3e-284 979.9 689 73.9
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 9.3e-284 979.9 647 76.7
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 1.6e-283 979.2 651 76.8
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 2.1e-283 978.8 651 77.0
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 6.1e-283 977.2 656 76.2
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 7.9e-283 976.9 648 76.5
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 1.8e-282 975.7 642 76.6
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.5e-281 972.6 649 76.7
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 1.9e-281 972.2 648 76.4
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 3.3e-281 971.5 651 76.3
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 1.3e-280 969.5 648 75.9
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 3.7e-280 968.0 658 75.7
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 6.3e-280 967.2 655 76.0
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 1.4e-276 956.1 697 71.7
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.1e-275 952.2 648 73.6
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 2.7e-275 951.8 648 73.8
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 2.7e-275 951.8 760 67.5
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 4.6e-275 951.0 646 72.8
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 3.3e-273 944.9 746 68.0
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.3e-273 944.5 655 72.7
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 2.9e-269 931.8 642 75.2
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 1.1e-268 929.9 647 72.5
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 1.4e-268 929.5 647 72.6
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 2.5e-268 928.7 655 73.1
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 2.5e-268 928.7 649 73.0
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 7.2e-268 927.2 647 72.3
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 1.2e-267 926.4 724 67.7
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 1.4e-266 922.9 645 72.1
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 2.3e-266 922.2 647 72.2
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 5.1e-266 921.0 644 72.5
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 2.6e-265 918.7 644 72.4
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 4.4e-265 917.9 644 72.2
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 2.8e-264 915.2 647 71.4
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 1.4e-263 912.9 647 71.4
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 2.4e-263 912.1 647 71.3
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 5.3e-263 911.0 647 71.1
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 5.3e-263 911.0 628 73.6
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 7.0e-263 910.6 573 79.4
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 9.1e-263 910.2 647 70.9
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 2.0e-262 909.1 647 70.9
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 4.5e-262 907.9 646 70.9
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 1.1e-260 903.3 647 70.6
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.7e-256 889.4 647 69.6
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 2.9e-253 878.6 654 69.7
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 1.0e-250 870.2 623 73.4
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 6.3e-248 860.9 651 66.4
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 5.0e-245 851.3 652 66.3
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 2.3e-234 815.8 653 64.6
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 4.1e-231 805.1 652 61.5
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 9.8e-217 757.3 655 58.0
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 3.7e-216 755.4 654 58.3
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 1.3e-213 746.9 647 58.0
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.5e-206 722.2 657 62.1
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 4.2e-199 698.7 640 61.1
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.3e-197 693.7 655 53.7
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 1.3e-195 687.2 429 80.0
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 7.7e-161 571.6 482 64.5
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.1e-159 567.8 442 68.3
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 8.3e-131 471.9 324 75.9
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 3.1e-122 443.4 310 70.6
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.9e-119 434.1 280 78.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 2.7e-113 413.7 625 39.0
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 8.0e-110 402.1 641 36.5
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 2.4e-82 310.8 700 32.1
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.3e-72 278.5 203 69.5
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 7.1e-66 256.1 186 69.4
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.5e-55 221.9 145 78.6
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-50 204.5 198 59.6
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 2.8e-46 191.0 129 76.0
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.4e-45 188.7 137 75.9
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-42 177.9 142 70.4
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 4.2e-42 177.2 134 69.4
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 8.8e-40 169.5 182 55.5
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.9e-35 154.5 157 53.5
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.8e-35 154.1 157 53.5
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 9.4e-34 149.4 160 54.4
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 2.7e-33 147.9 121 69.4
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 4.8e-14 84.0 71 67.6
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.7e-12 78.2 77 57.1


User provided reference genes

Program Settings