Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 5.9e-237 823.9 454 100.0
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.7e-199 699.5 504 78.2
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.9e-191 672.2 442 82.1
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.8e-172 609.8 483 71.4
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.3e-162 577.0 493 68.4
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 9.0e-161 570.9 485 67.8
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 2.5e-158 562.8 491 66.2
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 3.5e-157 558.9 491 66.2
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.3e-156 556.2 492 65.4
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.5e-155 553.5 492 65.7
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.5e-155 552.7 481 66.3
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.5e-155 552.7 498 65.1
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 5.7e-155 551.6 492 64.4
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.6e-154 550.1 501 64.5
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.8e-154 549.3 485 66.0
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.4e-153 547.0 492 64.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.8e-153 546.6 483 65.0
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.4e-153 546.2 494 65.2
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.4e-153 546.2 495 64.4
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.0e-152 543.1 493 65.1
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 2.6e-152 542.7 490 64.3
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-152 542.7 512 63.1
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-151 540.0 498 64.1
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.7e-151 540.0 492 63.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.2e-151 539.7 492 63.6
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-151 539.7 522 61.9
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 5.0e-151 538.5 488 64.3
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 5.0e-151 538.5 491 64.2
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.5e-150 536.2 487 64.9
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 4.2e-150 535.4 493 63.9
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 7.2e-150 534.6 494 63.8
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 9.3e-150 534.3 492 63.4
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 6.1e-149 531.6 473 65.1
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 3.9e-148 528.9 495 63.0
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-147 527.3 494 63.0
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.5e-147 526.9 492 63.0
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 7.4e-147 524.6 512 60.9
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 9.7e-147 524.2 484 63.8
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.3e-146 523.9 476 64.1
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.7e-146 523.5 480 63.3
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.2e-146 523.1 484 63.6
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.8e-146 522.7 475 63.8
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.8e-146 522.7 492 62.2
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 6.3e-146 521.5 475 63.6
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.3e-146 521.5 494 62.3
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 6.3e-146 521.5 484 63.8
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 8.2e-146 521.2 490 62.7
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.1e-145 520.8 491 61.9
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.1e-145 520.8 494 62.6
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.4e-145 519.6 493 62.3
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 5.3e-145 518.5 484 63.2
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 5.3e-145 518.5 485 63.1
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 5.3e-145 518.5 492 62.4
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 9.1e-145 517.7 491 61.3
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 9.1e-145 517.7 492 62.8
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.2e-144 517.3 481 62.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 2.0e-144 516.5 490 62.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 2.6e-144 516.2 488 63.1
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.6e-144 516.2 477 63.3
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 3.4e-144 515.8 491 61.1
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.9e-144 515.0 494 61.5
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 7.7e-144 514.6 501 61.1
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 7.7e-144 514.6 477 62.9
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.2e-143 513.1 492 61.4
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.0e-143 511.9 494 61.1
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.4e-142 510.4 484 62.6
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.5e-142 509.6 477 62.5
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.5e-142 509.6 475 62.7
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 3.2e-142 509.2 494 60.7
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 7.2e-142 508.1 492 61.2
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.1e-141 506.5 496 59.7
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 6.1e-141 505.0 497 59.8
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.8e-140 503.4 491 60.3
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 2.3e-140 503.1 477 62.3
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 5.1e-140 501.9 492 62.2
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 2.6e-139 499.6 496 60.1
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.6e-139 499.6 491 60.1
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 5.7e-139 498.4 484 60.1
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.7e-138 496.9 488 62.7
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.4e-137 493.0 487 58.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.5e-136 490.3 492 58.5
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 2.0e-136 490.0 492 59.1
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.6e-136 489.6 487 60.0
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.6e-136 489.6 443 64.1
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 3.4e-136 489.2 492 59.1
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 7.7e-136 488.0 492 58.5
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.7e-136 488.0 472 61.9
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.3e-135 487.3 492 58.5
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 2.2e-135 486.5 500 59.2
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.9e-135 486.1 420 66.9
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.9e-135 486.1 492 58.3
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 6.5e-135 485.0 499 59.7
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.9e-134 483.4 485 60.2
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.5e-134 483.0 492 58.1
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 2.7e-133 479.6 487 57.1
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 6.1e-133 478.4 480 59.6
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.8e-132 476.9 491 57.2
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 3.0e-132 476.1 494 58.5
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.0e-132 476.1 496 58.5
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 8.8e-132 474.6 494 58.3
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.1e-131 474.2 480 59.0
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.3e-130 470.7 498 57.2
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 3.7e-130 469.2 431 63.1
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.4e-129 467.2 493 57.0
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.3e-119 434.1 431 60.3
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 7.2e-118 428.3 380 65.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 6.3e-114 415.2 441 56.7
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.5e-110 404.1 366 65.0
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 5.5e-110 402.1 522 51.1
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.5e-110 402.1 364 65.7
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.2e-107 394.4 483 50.7
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.4e-105 385.6 357 63.0
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.3e-98 364.4 503 47.9
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 4.6e-96 355.9 477 50.3
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.3e-95 354.4 490 48.4
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.9e-94 350.5 358 57.0
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.1e-92 344.7 202 97.5
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-86 324.3 361 56.2
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.5e-86 324.3 361 56.2
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 2.5e-86 323.6 386 49.7
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.4e-81 307.8 269 67.3
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 2.1e-77 293.9 387 49.9
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.5e-62 243.8 390 44.6
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.4e-60 238.0 324 46.3
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.1e-60 236.9 383 42.3
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 2.6e-59 233.8 206 63.1
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 5.6e-54 216.1 194 64.9
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 8.4e-50 202.2 436 36.2
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.9e-49 201.1 254 50.0
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.1e-48 197.6 219 57.1
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-42 177.6 175 58.3
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.1e-41 172.6 94 93.6
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 6.7e-39 166.0 133 69.2
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.8e-37 159.8 408 33.3
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.4e-35 153.7 92 81.5
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-34 151.4 289 39.8
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 3.8e-34 150.2 398 31.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.4e-33 148.3 91 80.2
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.1e-30 138.7 109 65.1
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.2e-27 128.6 92 63.0
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.6e-27 127.5 374 29.4
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.6e-22 110.9 131 51.1
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.5e-14 85.1 88 58.0
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.2e-13 79.3 62 62.9
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.2e-13 79.3 62 62.9
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.7e-11 72.8 62 58.1
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 8.5e-10 69.3 63 63.5
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.5e-09 67.8 97 47.4
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 4.7e-08 63.5 70 55.7
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.8e-07 61.6 65 53.8
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.0e-07 60.5 152 35.5
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 9.7e-06 55.8 50 66.0


User provided reference genes

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