Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015107 Chenopodium quinoa HOM05D006530 ORTHO05D008283 0.0e+00 1291.6 668 100.0
AUR62017570 Chenopodium quinoa HOM05D006530 ORTHO05D008283 0.0e+00 1186.8 668 93.0
EL10Ac9g22807 Beta vulgaris HOM05D006530 ORTHO05D008283 8.1e-243 844.0 705 66.7
Hund24188 Selenicereus undatus HOM05D006530 ORTHO05D008283 4.1e-202 708.8 687 57.4
Atru.chr6.3278 Acer truncatum HOM05D006530 ORTHO05D008283 7.5e-180 634.8 706 52.7
Atru.chr6.3294 Acer truncatum HOM05D006530 ORTHO05D008283 9.8e-180 634.4 706 52.5
Hma1.2p1_0445F.1_g154110 Hydrangea macrophylla HOM05D006530 ORTHO05D008283 1.2e-177 627.5 670 53.0
Ciclev10014523m.g Citrus clementina HOM05D006530 ORTHO05D008283 7.7e-177 624.8 679 55.1
Thecc.01G184900 Theobroma cacao HOM05D006530 ORTHO05D008283 1.1e-175 620.9 685 51.5
Haze_12746 Corylus avellana HOM05D006530 ORTHO05D008283 2.3e-173 613.2 684 53.8
Cfa014298 Carpinus fangiana HOM05D006530 ORTHO05D008283 4.0e-173 612.5 687 52.3
Duzib133G1057 Durio zibethinus HOM05D006530 ORTHO05D008283 6.8e-173 611.7 691 50.8
COL.COLO4_32787 Corchorus olitorius HOM05D006530 ORTHO05D008283 8.9e-173 611.3 682 51.0
Rhsim06G0169800 Rhododendron simsii HOM05D006530 ORTHO05D008283 3.1e-170 602.8 671 53.1
Prupe.3G206900 Prunus persica HOM05D006530 ORTHO05D008283 1.0e-168 597.8 697 51.2
Gorai.001G218200 Gossypium raimondii HOM05D006530 ORTHO05D008283 6.6e-168 595.1 683 50.5
MD09G1117000 Malus domestica HOM05D006530 ORTHO05D008283 2.5e-167 593.2 673 52.3
CSS0049970 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 9.5e-167 591.3 686 52.2
CSS0002282 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 8.0e-166 588.2 686 51.9
Gohir.A07G188400 Gossypium hirsutum HOM05D006530 ORTHO05D008283 8.0e-166 588.2 680 50.7
Cpa.g.sc132.47 Carica papaya HOM05D006530 ORTHO05D008283 1.4e-165 587.4 641 52.7
TWI18G1412 Tripterygium wilfordii HOM05D006530 ORTHO05D008283 1.8e-165 587.0 669 52.0
Lalb_Chr08g0236491 Lupinus albus HOM05D006530 ORTHO05D008283 2.9e-163 579.7 660 50.0
FvH4_6g41820 Fragaria vesca HOM05D006530 ORTHO05D008283 3.7e-163 579.3 685 50.2
PSO541G4152 Papaver somniferum HOM05D006530 ORTHO05D008283 3.2e-162 576.2 684 51.6
Gohir.D07G195000 Gossypium hirsutum HOM05D006530 ORTHO05D008283 5.4e-162 575.5 678 49.7
Eucgr.K00730 Eucalyptus grandis HOM05D006530 ORTHO05D008283 4.6e-161 572.4 710 48.5
QL08p029933 Quercus lobata HOM05D006530 ORTHO05D008283 6.0e-161 572.0 707 50.1
FAN09G3579 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.0e-160 571.2 691 49.3
CsaV3_6G015570 Cucumis sativus L. HOM05D006530 ORTHO05D008283 2.3e-160 570.1 692 47.8
DCAR_019250 Daucus carota HOM05D006530 ORTHO05D008283 3.9e-160 569.3 682 50.9
RcHm_v2.0_Chr2g0157621 Rosa chinensis HOM05D006530 ORTHO05D008283 5.0e-160 568.9 686 49.3
Aqoxy1G02869 Aquilegia oxysepala HOM05D006530 ORTHO05D008283 4.3e-159 565.8 689 49.2
MELO3C019717.2 Cucumis melo HOM05D006530 ORTHO05D008283 5.6e-159 565.5 694 48.0
Nitab4.5_0000622g0140 Nicotiana tabacum HOM05D006530 ORTHO05D008283 1.6e-158 563.9 679 49.5
Cc05_g02470 Coffea canephora HOM05D006530 ORTHO05D008283 1.8e-157 560.5 667 49.6
Nn1g03345 Nelumbo nucifera HOM05D006530 ORTHO05D008283 8.9e-157 558.1 717 46.2
Medtr3g082840 Medicago truncatula HOM05D006530 ORTHO05D008283 1.5e-156 557.4 663 49.0
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 2.0e-156 557.0 696 49.4
MSTRG.14123 Avicennia marina HOM05D006530 ORTHO05D008283 5.8e-156 555.4 661 50.2
Sopen12g001950 Solanum pennellii HOM05D006530 ORTHO05D008283 9.8e-156 554.7 674 49.3
PGR142G2443 Punica granatum HOM05D006530 ORTHO05D008283 3.7e-155 552.7 801 43.8
Glyma.20G058500 Glycine max HOM05D006530 ORTHO05D008283 1.1e-154 551.2 662 48.8
THA.LOC104808864 Tarenaya hassleriana HOM05D006530 ORTHO05D008283 1.9e-154 550.4 681 47.4
CAN.G931.8 Capsicum annuum HOM05D006530 ORTHO05D008283 4.1e-154 549.3 680 48.4
Peaxi162Scf00047g02037 Petunia axillaris HOM05D006530 ORTHO05D008283 5.4e-154 548.9 677 48.7
PGSC0003DMG400013890 Solanum tuberosum HOM05D006530 ORTHO05D008283 5.4e-154 548.9 669 48.7
Manes.12G056700 Manihot esculenta HOM05D006530 ORTHO05D008283 1.2e-153 547.7 804 44.0
TAR624G0329 Trochodendron aralioides HOM05D006530 ORTHO05D008283 4.6e-153 545.8 725 47.3
arahy.Tifrunner.gnm1.ann1.KP8KK1 Arachis hypogaea HOM05D006530 ORTHO05D008283 1.7e-152 543.9 666 47.0
AT5G35690 Arabidopsis thaliana HOM05D006530 ORTHO05D008283 3.9e-152 542.7 659 49.2
Sabra14G0122100 Salix brachista HOM05D006530 ORTHO05D008283 8.6e-152 541.6 694 48.6
Solyc12g005980.2 Solanum lycopersicum HOM05D006530 ORTHO05D008283 1.1e-151 541.2 683 47.9
arahy.Tifrunner.gnm1.ann1.B2HSRW Arachis hypogaea HOM05D006530 ORTHO05D008283 1.9e-151 540.4 665 46.6
Lj1A785T50 Lonicera japonica HOM05D006530 ORTHO05D008283 5.6e-151 538.9 712 47.9
Nitab4.5_0005875g0040 Nicotiana tabacum HOM05D006530 ORTHO05D008283 9.5e-151 538.1 657 49.2
Psat5g104000 Pisum sativum HOM05D006530 ORTHO05D008283 2.1e-150 537.0 674 46.7
vmacro12144 Vaccinium macrocarpon HOM05D006530 ORTHO05D008283 2.8e-150 536.6 809 44.3
ECA236G0541 Erigeron canadensis HOM05D006530 ORTHO05D008283 1.4e-149 534.3 693 46.8
Ca_16350_v3 Cicer arietinum L. HOM05D006530 ORTHO05D008283 2.3e-149 533.5 661 47.0
Aa31sc124G40 Aethionema arabicum HOM05D006530 ORTHO05D008283 3.1e-149 533.1 663 48.4
CANSAT64G1714 Cannabis sativa HOM05D006530 ORTHO05D008283 4.0e-149 532.7 690 47.1
SalBow3G0397 Salvia bowleyana HOM05D006530 ORTHO05D008283 1.2e-148 531.2 683 48.0
Sp7g06570 Schrenkiella parvula HOM05D006530 ORTHO05D008283 7.5e-148 528.5 661 47.7
Lj6g0023666 Lotus japonicus HOM05D006530 ORTHO05D008283 1.3e-147 527.7 667 48.0
Carub.0007s3142 Capsella rubella HOM05D006530 ORTHO05D008283 2.9e-147 526.6 661 50.1
Phvul.006G013400 Phaseolus vulgaris HOM05D006530 ORTHO05D008283 6.4e-147 525.4 665 47.5
Zm00001eb034180 Zea mays HOM05D006530 ORTHO05D008283 8.3e-147 525.0 680 46.0
GSVIVG01030533001 Vitis vinifera HOM05D006530 ORTHO05D008283 1.9e-146 523.9 623 50.4
CARHR217000 Cardamine hirsuta HOM05D006530 ORTHO05D008283 1.2e-145 521.2 657 46.4
AL7G44540 Arabidopsis lyrata HOM05D006530 ORTHO05D008283 1.0e-144 518.1 672 46.7
Os08g0500800 Oryza sativa ssp. japonica HOM05D006530 ORTHO05D008283 1.3e-144 517.7 694 45.5
VMungo0540G0580 Vigna mungo HOM05D006530 ORTHO05D008283 1.7e-144 517.3 664 47.1
SalBow1G8616 Salvia bowleyana HOM05D006530 ORTHO05D008283 8.6e-144 515.0 722 45.4
HanXRQChr16g0508331 Helianthus annuus HOM05D006530 ORTHO05D008283 7.3e-143 511.9 668 47.0
Sc20g0005070 Simmondsia chinensis HOM05D006530 ORTHO05D008283 6.2e-142 508.8 619 49.4
Migut.H01255 Erythranthe guttata HOM05D006530 ORTHO05D008283 8.1e-142 508.4 669 45.4
Thhalv10003827m.g Eutrema salsugineum HOM05D006530 ORTHO05D008283 1.1e-141 508.1 658 47.0
FAN14G2540 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.8e-141 507.3 685 46.9
Dinv08706 Davidia involucrata HOM05D006530 ORTHO05D008283 3.1e-141 506.5 604 50.0
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 2.6e-140 503.4 655 45.6
BolC4t25914H Brassica oleracea HOM05D006530 ORTHO05D008283 4.4e-140 502.7 655 45.8
C04p43360 Brassica napus HOM05D006530 ORTHO05D008283 9.9e-140 501.5 655 45.6
CiPaw.03G274100 Carya illinoinensis HOM05D006530 ORTHO05D008283 9.9e-140 501.5 617 48.8
Sed0022132 Sechium edule HOM05D006530 ORTHO05D008283 4.9e-139 499.2 813 40.2
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 6.0e-137 492.3 658 45.7
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 6.0e-137 492.3 658 45.7
BcaB06g26968 Brassica carinata HOM05D006530 ORTHO05D008283 9.6e-135 485.0 663 44.8
Oeu061995.2 Olea europaea HOM05D006530 ORTHO05D008283 9.6e-135 485.0 794 41.3
ATR1128G020 Amborella trichopoda HOM05D006530 ORTHO05D008283 9.0e-133 478.4 785 41.3
unitig_26.g9922 Utricularia gibba HOM05D006530 ORTHO05D008283 5.8e-132 475.7 656 45.1
Actinidia09758 Actinidia chinensis HOM05D006530 ORTHO05D008283 4.2e-130 469.5 704 44.9
Lsat_1_v5_gn_7_94721 Lactuca sativa HOM05D006530 ORTHO05D008283 1.6e-129 467.6 668 45.4
CDE10G0969 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 1.7e-128 464.2 767 39.8
HPP92_018405 Vanilla planifolia HOM05D006530 ORTHO05D008283 2.4e-125 453.8 661 43.6
FAN02G4367 Fragaria x ananassa HOM05D006530 ORTHO05D008283 8.1e-118 428.7 398 58.3
Pp3c20_8530 Physcomitrium patens HOM05D006530 ORTHO05D008283 8.4e-115 418.7 708 38.8
CDE10G0956 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 3.3e-103 380.2 767 37.3
ATR1001G009 Amborella trichopoda HOM05D006530 ORTHO05D008283 4.5e-100 369.8 366 53.3
AagrBONN_evm.TU.Sc2ySwM_228.92 Anthoceros agrestis HOM05D006530 ORTHO05D008283 3.9e-96 356.7 716 37.3
SEGI_28144 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 4.3e-95 353.2 329 56.2
SGA_v2.0_scaffold49G18363 Striga asiatica HOM05D006530 ORTHO05D008283 1.1e-85 322.0 666 33.5
BcaB06g26965 Brassica carinata HOM05D006530 ORTHO05D008283 1.4e-85 321.6 462 43.5
Mapoly0071s0087 Marchantia polymorpha HOM05D006530 ORTHO05D008283 2.6e-79 300.8 354 50.3
TPR.G22470 Trifolium pratense HOM05D006530 ORTHO05D008283 4.2e-74 283.5 200 67.0
TPR.G7490 Trifolium pratense HOM05D006530 ORTHO05D008283 2.0e-68 264.6 456 40.8
ClCG02G018190 Citrullus lanatus HOM05D006530 ORTHO05D008283 5.0e-59 233.4 675 32.1
Cre16.g684000 Chlamydomonas reinhardtii HOM05D006530 ORTHO05D008283 4.6e-44 183.7 309 36.2
MD17G1108500 Malus domestica HOM05D006530 ORTHO05D008283 1.7e-43 181.8 655 27.9
MCO07G103 Micromonas commoda HOM05D006530 ORTHO05D008283 2.1e-41 174.9 277 38.6
FAN03G2558 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.8e-41 174.5 146 58.9
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.3e-30 139.0 125 56.0
FAN15G1469 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.2e-30 138.3 119 58.0
FAN27G2805 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.2e-30 138.3 119 58.0
SEGI_11846 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 4.9e-30 137.1 118 55.9
Cfa025683 Carpinus fangiana HOM05D006530 ORTHO05D008283 5.4e-21 107.1 293 28.7
SGA_v2.0_scaffold112G31585 Striga asiatica HOM05D006530 ORTHO05D008283 3.6e-17 94.4 93 54.8
BcaB06g26964 Brassica carinata HOM05D006530 ORTHO05D008283 1.8e-16 92.0 81 55.6
SHI10239 Sapria himalayana HOM05D006530 ORTHO05D008283 3.9e-11 74.3 93 40.9
FvH4_3g29470 Fragaria vesca HOM05D003423 ORTHO05D003910 4.3e-10 70.9 223 31.4
Manes.15G061600 Manihot esculenta HOM05D003423 ORTHO05D003910 1.3e-09 69.3 241 30.7
Lj6g0015704 Lotus japonicus HOM05D003423 ORTHO05D003910 2.8e-09 68.2 203 30.0
Glyma.18G078800 Glycine max HOM05D003423 ORTHO05D003910 3.6e-09 67.8 199 29.6
AL1G64060 Arabidopsis lyrata HOM05D003423 ORTHO05D003910 8.1e-09 66.6 199 28.6
FAN25G2240 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.1e-08 66.2 224 31.7
Hund01908 Selenicereus undatus HOM05D003423 ORTHO05D003910 1.1e-08 66.2 199 29.6
CDE04G0040 Ceratophyllum demersum HOM05D003423 ORTHO05D003910 1.4e-08 65.9 105 39.0
Lalb_Chr15g0081991 Lupinus albus HOM05D003423 ORTHO05D003910 1.4e-08 65.9 199 29.6
MBI19_g29441_MAGBIO Magnolia biondii HOM05D006530 ORTHO05D008283 2.4e-08 65.1 132 35.6
SMO361G0751 Selaginella moellendorffii HOM05D003423 ORTHO05D003910 2.4e-08 65.1 123 35.0
TWI39G0701 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 2.4e-08 65.1 117 34.2
arahy.Tifrunner.gnm1.ann1.HUB5JH Arachis hypogaea HOM05D003423 ORTHO05D003910 3.1e-08 64.7 199 29.6
Lj1A888G39 Lonicera japonica HOM05D003423 ORTHO05D003910 3.1e-08 64.7 199 29.1
arahy.Tifrunner.gnm1.ann1.08VBYE Arachis hypogaea HOM05D003423 ORTHO05D003910 5.3e-08 63.9 199 28.1
arahy.Tifrunner.gnm1.ann1.FCEI8S Arachis hypogaea HOM05D003423 ORTHO05D003910 5.3e-08 63.9 199 28.1
Oeu041432.1 Olea europaea HOM05D003423 ORTHO05D003910 5.3e-08 63.9 117 33.3
Lj9A540T81 Lonicera japonica HOM05D003423 ORTHO05D003910 9.0e-08 63.2 171 31.6
Aqoxy6G02866 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 1.5e-07 62.4 205 27.3
SHI10236 Sapria himalayana HOM05D006530 ORTHO05D008283 2.0e-07 62.0 72 43.1
Phvul.006G055600 Phaseolus vulgaris HOM05D003423 ORTHO05D003910 2.6e-07 61.6 229 26.6
ATR0580G345 Amborella trichopoda HOM05D003423 ORTHO05D003910 3.4e-07 61.2 248 28.2
ClCG09G021170 Citrullus lanatus HOM05D003423 ORTHO05D003910 3.4e-07 61.2 170 30.6
CsaV3_7G018340 Cucumis sativus L. HOM05D003423 ORTHO05D003910 3.4e-07 61.2 170 30.6
PSO063G5220 Papaver somniferum HOM05D003423 ORTHO05D003910 3.4e-07 61.2 217 29.0
PSO782G1032 Papaver somniferum HOM05D003423 ORTHO05D003910 3.4e-07 61.2 223 28.3
TAR624G0752 Trochodendron aralioides HOM05D003423 ORTHO05D003910 3.4e-07 61.2 188 30.3
CBR_g12763 Chara braunii HOM05D003423 ORTHO05D003910 4.5e-07 60.8 176 32.4
TAR626G1285 Trochodendron aralioides HOM05D003423 ORTHO05D003910 4.5e-07 60.8 105 36.2
EL10Ac7g18155 Beta vulgaris HOM05D003423 ORTHO05D003910 5.8e-07 60.5 106 34.9
Ciclev10027497m.g Citrus clementina HOM05D003423 ORTHO05D003910 5.8e-07 60.5 88 37.5
MELO3C024918.2 Cucumis melo HOM05D003423 ORTHO05D003910 5.8e-07 60.5 170 30.6
VMungo0540G0232 Vigna mungo HOM05D003423 ORTHO05D003910 5.8e-07 60.5 230 29.1
Dinv10321 Davidia involucrata HOM05D003423 ORTHO05D003910 7.6e-07 60.1 171 31.6
PGR102G0515 Punica granatum HOM05D003423 ORTHO05D003910 9.9e-07 59.7 88 38.6
AagrBONN_evm.TU.Sc2ySwM_228.5488 Anthoceros agrestis HOM05D003423 ORTHO05D003910 1.3e-06 59.3 88 39.8
EL10Ac4g07604 Beta vulgaris HOM05D003423 ORTHO05D003910 1.3e-06 59.3 226 28.8
ClCG11G012540 Citrullus lanatus HOM05D002747 ORTHO05D003069 1.3e-06 59.3 87 39.1
Eucgr.F03997 Eucalyptus grandis HOM05D003423 ORTHO05D003910 1.3e-06 59.3 88 39.8
Atru.chr2.3667 Acer truncatum HOM05D003423 ORTHO05D003910 1.7e-06 58.9 218 25.7
Ca_12436_v3 Cicer arietinum L. HOM05D003423 ORTHO05D003910 1.7e-06 58.9 107 31.8
Oeu051387.2 Olea europaea HOM05D003423 ORTHO05D003910 1.7e-06 58.9 88 39.8
Prupe.3G168300 Prunus persica HOM05D003423 ORTHO05D003910 1.7e-06 58.9 88 37.5
MELO3C009034.2 Cucumis melo HOM05D003423 ORTHO05D003910 2.2e-06 58.5 88 37.5
Atru.chr1.2766 Acer truncatum HOM05D003423 ORTHO05D003910 2.9e-06 58.2 88 37.5
Nn3g19300 Nelumbo nucifera HOM05D003423 ORTHO05D003910 2.9e-06 58.2 87 37.9
Potri.011G092900 Populus trichocarpa HOM05D003423 ORTHO05D003910 2.9e-06 58.2 212 27.4
Sabra08G0005700 Salix brachista HOM05D003423 ORTHO05D003910 2.9e-06 58.2 88 35.2
TWI38G0990 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 2.9e-06 58.2 199 26.6
VMungo1080G0425 Vigna mungo HOM05D003423 ORTHO05D003910 2.9e-06 58.2 105 34.3
QL05p083582 Quercus lobata HOM05D003423 ORTHO05D003910 3.8e-06 57.8 88 37.5
QL05p083734 Quercus lobata HOM05D003423 ORTHO05D003910 3.8e-06 57.8 88 37.5
vmacro09657 Vaccinium macrocarpon HOM05D003423 ORTHO05D003910 3.8e-06 57.8 212 29.2
MSTRG.14479 Avicennia marina HOM05D003423 ORTHO05D003910 4.9e-06 57.4 272 26.5
ClCG04G000610 Citrullus lanatus HOM05D003423 ORTHO05D003910 4.9e-06 57.4 88 37.5
Nitab4.5_0001691g0030 Nicotiana tabacum HOM05D003423 ORTHO05D003910 4.9e-06 57.4 88 37.5
Rhsim04G0013800 Rhododendron simsii HOM05D003423 ORTHO05D003910 4.9e-06 57.4 211 28.9
Rhsim08G0246600 Rhododendron simsii HOM05D003423 ORTHO05D003910 4.9e-06 57.4 208 27.9
CAN.G790.42 Capsicum annuum HOM05D003423 ORTHO05D003910 6.4e-06 57.0 88 37.5
DCAR_007666 Daucus carota HOM05D003423 ORTHO05D003910 6.4e-06 57.0 160 27.5
Peaxi162Scf00038g02438 Petunia axillaris HOM05D003423 ORTHO05D003910 6.4e-06 57.0 88 37.5
PGSC0003DMG400009184 Solanum tuberosum HOM05D003423 ORTHO05D003910 6.4e-06 57.0 88 36.4
vmacro18704 Vaccinium macrocarpon HOM05D003423 ORTHO05D003910 6.4e-06 57.0 213 29.1
Manes.03G139900 Manihot esculenta HOM05D003423 ORTHO05D003910 8.4e-06 56.6 191 27.7
Os06g0191200 Oryza sativa ssp. japonica HOM05D003423 ORTHO05D003910 8.4e-06 56.6 220 28.6
SGA_v2.0_scaffold122G33294 Striga asiatica HOM05D003423 ORTHO05D003910 8.4e-06 56.6 215 27.0
TPR.G30741 Trifolium pratense HOM05D003423 ORTHO05D003910 8.4e-06 56.6 242 26.4


User provided reference genes

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