Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1542.7 750 100.0
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1469.9 750 95.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 750 83.2
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1269.6 718 85.8
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1246.1 748 80.3
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1245.3 751 79.9
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1243.8 751 80.2
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1243.4 751 79.6
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1240.3 750 79.7
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1237.6 752 79.1
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1233.0 751 79.2
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1231.1 750 78.9
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 750 78.4
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1229.5 750 79.5
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1229.5 751 78.8
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1228.8 748 78.7
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1228.8 751 79.4
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 751 79.4
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 750 78.7
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 748 79.0
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 748 79.5
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1228.0 751 79.6
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 748 78.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 748 78.6
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 752 78.3
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1225.7 749 78.6
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 751 78.2
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 750 78.5
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1224.2 750 79.2
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1222.6 749 78.8
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1222.6 751 77.9
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1222.2 750 78.1
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1221.5 750 78.4
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1220.3 751 78.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1219.5 751 77.8
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1219.1 750 78.3
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1218.4 750 78.8
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1218.4 751 78.4
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 750 77.7
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 751 78.7
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 751 77.5
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 750 79.1
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 752 79.1
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 750 77.9
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1215.3 751 77.8
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1215.3 750 78.4
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1214.9 750 78.1
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1212.2 750 77.6
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1211.4 751 78.6
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1211.1 749 77.4
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1211.1 752 78.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1210.3 750 78.3
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1210.3 743 78.6
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1209.9 793 74.7
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1209.9 750 78.0
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 750 77.7
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 749 77.7
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1208.4 750 77.3
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1207.2 750 77.9
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 751 77.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1206.4 753 77.3
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1204.9 750 76.7
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1204.9 720 79.6
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1204.1 750 77.2
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1203.3 750 77.3
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1203.3 750 78.3
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1203.0 750 78.1
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1201.4 750 76.7
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1199.9 750 76.5
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1199.5 762 76.4
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1199.1 750 76.3
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1198.0 750 76.3
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1198.0 750 76.7
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1197.6 750 76.4
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1197.2 750 76.4
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1196.8 753 76.9
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1196.4 750 76.3
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1196.4 766 77.2
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1196.4 750 76.3
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1196.0 793 73.8
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1195.3 750 76.5
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1191.8 750 76.9
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1190.6 750 76.4
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1189.9 750 76.0
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1189.5 751 76.8
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1187.2 750 75.9
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1186.4 741 76.9
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1184.9 798 72.4
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1184.9 798 72.4
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1184.5 833 70.8
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1184.1 750 75.5
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1182.9 750 75.7
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1182.9 750 75.6
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1182.2 750 75.2
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1181.4 799 72.7
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1174.8 680 83.2
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1152.5 748 75.4
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1150.6 747 74.0
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1143.6 750 74.7
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1143.3 752 74.7
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1141.7 762 73.0
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1141.7 762 73.1
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1141.7 761 73.1
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1140.6 750 75.6
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1134.0 717 80.3
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1133.6 752 73.1
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1119.8 750 71.9
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1116.7 758 71.1
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1115.5 752 73.8
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1115.1 713 76.7
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 0.0e+00 1114.8 767 74.8
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1114.4 750 72.9
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1112.4 676 79.1
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1100.9 751 71.5
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1098.6 685 77.7
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1097.8 749 71.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1092.0 711 73.3
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 2.1e-311 1072.0 751 69.2
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 2.4e-307 1058.5 632 80.9
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 8.9e-307 1056.6 632 80.9
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.2e-295 1019.6 602 81.2
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.6e-292 1009.2 716 69.7
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 9.9e-290 1000.0 750 66.7
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 5.1e-278 961.1 752 62.9
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.4e-275 953.0 751 61.5
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 9.0e-275 950.3 731 63.3
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 5.3e-251 871.3 707 60.1
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.0e-250 869.4 673 62.6
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 9.4e-248 860.5 684 61.8
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 5.2e-246 854.7 584 72.6
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.0e-245 852.8 715 58.7
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.0e-234 816.2 524 76.9
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.4e-230 803.5 717 55.4
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 5.7e-229 798.1 807 52.2
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.5e-213 746.9 524 70.4
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 9.2e-203 711.1 716 51.5
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 3.4e-197 692.6 434 77.2
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 9.9e-173 611.3 439 67.4
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.5e-168 596.7 317 92.7
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 3.8e-148 529.6 393 66.2
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 7.9e-146 521.9 303 84.5
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.2e-143 513.8 357 70.0
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.3e-132 478.0 312 76.0
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 3.5e-125 453.4 351 68.7
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.7e-125 452.2 341 65.4
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.4e-112 409.8 284 70.8
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.2e-102 377.1 322 60.9
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 8.6e-92 342.4 183 82.0
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.6e-90 337.0 209 76.6
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 3.0e-76 290.8 430 43.5
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.1e-70 272.3 168 72.6
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 3.6e-66 257.3 222 59.9
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.8e-64 250.0 208 60.6
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.1e-62 245.7 355 42.8
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 8.7e-60 236.1 204 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.6e-48 198.0 219 46.1
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 6.0e-45 186.8 202 53.0
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 3.9e-44 184.1 131 64.9
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-41 174.5 101 77.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 5.3e-41 173.7 208 49.0
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 8.5e-31 139.8 136 52.2
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 3.9e-28 131.0 110 56.4
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.5e-24 119.0 161 44.7
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 5.9e-24 117.1 185 40.5
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.7e-23 115.5 185 40.0
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.4e-22 112.5 108 54.6
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 5.5e-22 110.5 63 74.6
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 3.6e-21 107.8 60 86.7
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 4.8e-18 97.4 110 51.8
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 4.8e-18 97.4 130 46.9
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 4.1e-17 94.4 50 82.0
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.2e-16 92.8 111 46.8
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-11 75.5 75 52.0
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 2.6e-11 75.1 74 52.7
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 9.7e-11 73.2 50 74.0
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.7e-07 62.4 44 77.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 2.2e-07 62.0 40 65.0
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 1.1e-06 59.7 52 59.6
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 2.5e-06 58.5 34 82.4


User provided reference genes

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