Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.4e-200 701.4 346 100.0
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.7e-170 601.3 305 96.7
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 5.0e-135 485.0 308 74.7
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 1.9e-131 473.0 307 73.9
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.2e-128 463.8 305 72.5
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 8.5e-127 457.6 306 72.2
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 1.4e-126 456.8 315 69.2
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.4e-126 454.1 310 69.0
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 1.6e-125 453.4 311 69.1
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.1e-125 453.0 307 68.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.4e-124 450.3 305 70.2
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.8e-124 449.9 301 72.1
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 5.1e-124 448.4 308 70.8
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.1e-123 447.2 307 68.7
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.1e-123 447.2 308 68.5
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 3.3e-123 445.7 308 69.2
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 4.4e-123 445.3 311 68.5
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 4.4e-123 445.3 311 69.5
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 7.4e-123 444.5 312 68.6
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 1.3e-122 443.7 312 69.2
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.7e-122 443.4 307 68.4
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 8.2e-122 441.0 309 69.9
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.8e-121 439.9 308 68.2
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 3.1e-121 439.1 311 70.4
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 4.1e-121 438.7 307 68.7
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.3e-121 438.3 305 72.5
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.2e-120 437.2 345 65.2
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.5e-120 436.8 308 68.5
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 2.6e-120 436.0 306 69.3
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 3.4e-120 435.6 308 68.2
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 3.4e-120 435.6 308 68.2
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 4.5e-120 435.3 311 68.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 4.5e-120 435.3 308 68.8
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 7.7e-120 434.5 308 67.9
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.0e-119 434.1 311 67.2
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.7e-119 433.3 309 66.7
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.7e-119 433.3 309 67.0
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 2.2e-119 433.0 308 66.6
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 2.2e-119 433.0 303 69.3
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 3.8e-119 432.2 304 68.4
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 3.8e-119 432.2 307 69.4
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.8e-119 432.2 308 68.5
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.5e-119 431.4 308 67.5
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 8.5e-119 431.0 309 67.6
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 4.2e-118 428.7 307 65.8
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.2e-117 427.2 311 67.5
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.6e-117 426.8 307 67.1
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.6e-117 426.8 313 67.4
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 2.1e-117 426.4 308 67.5
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 2.7e-117 426.0 302 68.9
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 8.0e-117 424.5 310 64.5
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.0e-116 424.1 251 81.3
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.0e-116 424.1 299 69.2
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 3.9e-116 422.2 307 66.8
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 3.9e-116 422.2 308 66.9
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.5e-115 420.2 306 66.3
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 2.0e-115 419.9 313 67.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.3e-115 419.1 310 64.2
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 2.4e-113 412.9 307 66.8
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 3.1e-113 412.5 311 64.6
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 7.0e-113 411.4 306 65.4
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.2e-112 410.6 310 63.5
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.6e-112 409.5 305 66.9
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.6e-112 409.5 309 63.8
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 5.9e-112 408.3 305 65.2
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 5.0e-111 405.2 292 67.5
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 8.5e-111 404.4 311 63.3
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 8.5e-111 404.4 310 63.5
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.1e-110 404.1 306 63.1
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 2.5e-110 402.9 355 57.7
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 6.1e-109 398.3 305 63.0
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 3.0e-108 396.0 305 63.0
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 4.0e-108 395.6 308 64.6
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 5.2e-108 395.2 308 62.7
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 8.8e-108 394.4 307 63.2
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 8.8e-108 394.4 274 69.0
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 3.3e-107 392.5 309 64.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.8e-106 389.4 305 63.9
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 4.8e-106 388.7 308 61.0
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 1.1e-105 387.5 302 64.6
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 2.0e-104 383.3 300 63.7
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 1.0e-103 380.9 282 64.2
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.5e-103 377.9 301 64.1
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 1.5e-102 377.1 308 60.7
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.5e-102 377.1 304 61.5
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.9e-102 376.7 301 64.1
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.2e-102 375.9 301 63.8
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 5.5e-102 375.2 309 61.8
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 7.2e-102 374.8 265 68.3
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 7.2e-102 374.8 301 63.8
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.2e-102 374.8 301 64.5
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.1e-101 373.2 301 63.5
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.1e-101 373.2 301 63.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 2.7e-101 372.9 301 63.8
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-101 372.9 300 63.7
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-101 372.9 300 63.7
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.0e-100 369.4 242 69.0
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 8.8e-100 367.9 308 58.1
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 4.4e-99 365.5 304 58.6
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.8e-98 362.8 300 63.3
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.3e-98 361.7 305 60.3
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 4.1e-97 359.0 305 58.0
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 4.5e-96 355.5 307 56.7
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 5.9e-96 355.1 308 56.5
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 5.5e-94 348.6 309 55.7
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.0e-92 342.8 308 54.2
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 8.9e-92 341.3 349 50.4
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 2.0e-91 340.1 306 59.2
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 3.4e-91 339.3 305 54.8
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 7.5e-91 338.2 308 53.9
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 3.7e-90 335.9 305 54.8
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 4.9e-90 335.5 315 56.8
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.1e-89 334.3 308 53.9
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.1e-89 332.8 305 53.8
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 5.4e-89 332.0 303 52.8
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.7e-88 329.7 308 52.9
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.0e-87 327.8 306 52.6
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 2.5e-86 323.2 305 52.5
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 2.5e-86 323.2 305 52.5
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 6.1e-85 318.5 306 52.3
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 6.1e-85 318.5 306 52.3
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 8.0e-85 318.2 307 52.1
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 8.3e-82 308.1 223 69.5
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.4e-81 306.6 207 71.5
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 3.5e-80 302.8 310 48.4
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 2.5e-78 296.6 303 49.5
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 4.3e-78 295.8 182 73.6
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 1.1e-76 291.2 319 47.3
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.9e-73 280.4 312 47.1
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 9.5e-70 268.1 196 61.2
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 8.1e-69 265.0 256 52.7
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 8.1e-61 238.4 149 68.5
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 5.6e-54 215.7 170 55.9
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 9.6e-54 214.9 169 67.5
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 5.3e-52 209.1 144 63.2
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.1e-49 201.4 206 51.5
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.9e-46 190.7 342 36.0
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.3e-39 167.2 239 39.3
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.5e-38 164.5 159 58.5
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.3e-30 136.3 87 77.0
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 9.0e-28 128.6 151 48.3
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.4e-25 121.3 233 34.3
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.9e-25 120.9 269 34.6
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.6e-24 117.9 229 33.6
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.9e-23 113.2 78 57.7
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 9.4e-17 92.0 90 56.7
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.6e-16 91.3 101 53.5
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 3.9e-15 86.7 52 75.0
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 8.8e-15 85.5 51 72.5
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.5e-14 84.0 71 53.5
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.2e-11 75.1 276 24.6
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.7e-10 71.2 294 23.1
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 5.0e-10 69.7 227 25.1
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 5.0e-10 69.7 227 25.1
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 1.1e-09 68.6 303 23.4
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 1.1e-09 68.6 227 25.1
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 1.9e-09 67.8 303 23.4
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 1.9e-09 67.8 227 24.7
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.9e-09 67.8 211 28.0
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 1.9e-09 67.8 211 27.0
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.5e-09 67.4 48 54.2
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.5e-09 67.4 303 25.1
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 2.5e-09 67.4 302 23.5
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 3.2e-09 67.0 303 25.1
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 4.2e-09 66.6 303 23.1
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 4.2e-09 66.6 303 25.1
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 7.2e-09 65.9 305 23.6
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 9.4e-09 65.5 302 23.2
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 9.4e-09 65.5 288 22.9
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 9.4e-09 65.5 305 24.3
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 1.2e-08 65.1 303 23.1
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.2e-08 65.1 212 29.2
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 2.1e-08 64.3 197 24.9
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.1e-08 64.3 258 27.9
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 2.1e-08 64.3 48 60.4
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 3.6e-08 63.5 211 28.4
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 4.7e-08 63.2 50 48.0
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.3e-07 60.8 211 26.1
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 3.0e-07 60.5 231 23.4
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 5.1e-07 59.7 302 23.8
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 8.8e-07 58.9 141 29.1
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 1.5e-06 58.2 148 27.0
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.0e-06 57.8 167 28.7
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 3.3e-06 57.0 141 28.4


User provided reference genes

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