Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.3e-43 177.9 89 100.0
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.4e-43 176.8 89 98.9
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-30 136.0 87 77.0
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.2e-30 134.8 87 77.0
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.2e-24 116.3 88 64.8
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 1.2e-19 99.8 90 57.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.2e-19 99.8 89 64.0
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 9.8e-19 96.7 88 54.5
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.8e-18 94.4 91 56.0
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 4.8e-18 94.4 91 56.0
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 1.4e-17 92.8 91 57.1
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.4e-17 92.8 91 57.1
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.4e-17 92.8 90 53.3
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.4e-17 92.8 88 59.1
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.8e-17 92.4 88 55.7
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 1.8e-17 92.4 88 58.0
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 2.4e-17 92.0 91 56.0
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 5.4e-17 90.9 90 52.2
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 9.1e-17 90.1 90 54.4
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 9.1e-17 90.1 89 56.2
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 9.1e-17 90.1 91 56.0
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.2e-16 89.7 92 54.3
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.2e-16 89.7 90 54.4
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.2e-16 89.7 91 54.9
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.2e-16 89.7 91 56.0
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 1.6e-16 89.4 88 54.5
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.6e-16 89.4 88 55.7
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 2.0e-16 89.0 86 59.3
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 2.0e-16 89.0 92 55.4
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.0e-16 89.0 88 56.8
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 2.0e-16 89.0 83 59.0
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.7e-16 88.6 88 53.4
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 2.7e-16 88.6 85 56.5
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 3.5e-16 88.2 92 54.3
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 3.5e-16 88.2 92 54.3
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 3.5e-16 88.2 92 54.3
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.5e-16 87.8 87 54.0
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 4.5e-16 87.8 85 55.3
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 5.9e-16 87.4 88 59.1
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 5.9e-16 87.4 87 52.9
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 1.0e-15 86.7 91 53.8
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.3e-15 86.3 88 56.8
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.3e-15 86.3 87 55.2
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.7e-15 85.9 88 55.7
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 5.0e-15 84.3 60 71.7
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 5.0e-15 84.3 65 67.7
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 6.6e-15 84.0 89 55.1
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 6.6e-15 84.0 91 49.5
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.6e-15 84.0 91 53.8
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.1e-14 83.2 88 58.0
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 2.5e-14 82.0 84 51.2
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 3.3e-14 81.6 90 52.2
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.6e-13 79.3 85 52.9
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.6e-13 79.3 88 51.1
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 2.8e-13 78.6 80 52.5
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 3.6e-13 78.2 85 54.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.6e-13 78.2 86 53.5
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 4.7e-13 77.8 85 51.8
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 4.7e-13 77.8 72 59.7
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.4e-12 76.3 48 77.1
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.8e-12 75.9 92 46.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.8e-12 75.9 84 50.0
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 5.2e-12 74.3 55 67.3
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 5.2e-12 74.3 60 61.7
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 5.2e-12 74.3 59 62.7
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 6.8e-12 73.9 76 53.9
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 6.8e-12 73.9 59 66.1
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 6.8e-12 73.9 87 50.6
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 8.9e-12 73.6 56 67.9
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.2e-11 73.2 60 61.7
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 4.4e-11 71.2 59 61.0
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 5.7e-11 70.9 86 50.0
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 9.8e-11 70.1 78 47.4
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 9.8e-11 70.1 44 75.0
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.3e-10 69.7 91 45.1
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.3e-10 69.7 92 44.6
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 2.2e-10 68.9 60 58.3
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 2.8e-10 68.6 44 72.7
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 3.7e-10 68.2 59 55.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 3.7e-10 68.2 57 59.6
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 4.9e-10 67.8 39 84.6
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.3e-10 67.0 56 64.3
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.3e-10 67.0 56 64.3
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-09 66.6 39 82.1
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.1e-09 66.6 44 68.2
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.1e-09 66.6 44 68.2
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.4e-09 66.2 58 56.9
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 1.4e-09 66.2 79 46.8
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-09 66.2 39 82.1
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-09 66.2 39 82.1
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.4e-09 66.2 44 65.9
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.8e-09 65.9 91 44.0
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.4e-09 65.5 33 87.9
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 2.4e-09 65.5 86 47.7
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 3.1e-09 65.1 76 48.7
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-09 65.1 39 79.5
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.1e-09 65.1 46 69.6
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.1e-09 65.1 46 69.6
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 4.1e-09 64.7 39 79.5
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 5.4e-09 64.3 44 70.5
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 5.4e-09 64.3 56 62.5
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.4e-09 64.3 55 63.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.4e-09 64.3 55 63.6
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 7.0e-09 63.9 53 60.4
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 9.2e-09 63.5 53 60.4
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 9.2e-09 63.5 45 66.7
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 9.2e-09 63.5 58 56.9
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.0e-08 62.4 64 54.7
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.7e-08 62.0 49 65.3
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.7e-08 62.0 49 61.2
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 3.5e-08 61.6 84 46.4
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 4.5e-08 61.2 64 53.1
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 5.9e-08 60.8 64 53.1
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 5.9e-08 60.8 51 64.7
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 5.9e-08 60.8 52 63.5
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.0e-07 60.1 48 60.4
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.3e-07 58.9 38 76.3
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 5.0e-07 57.8 74 45.9
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 8.6e-07 57.0 55 54.5
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 8.6e-07 57.0 55 54.5
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 8.6e-07 57.0 55 54.5
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 8.6e-07 57.0 55 54.5
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 8.6e-07 57.0 55 54.5
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.1e-06 56.6 48 54.2
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 4.3e-06 54.7 84 40.5
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 7.3e-06 53.9 87 33.3


User provided reference genes

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