Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014580 Chenopodium quinoa HOM05D004167 ORTHO05D005012 7.3e-118 427.2 205 100.0
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 9.0e-76 287.3 167 86.2
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 2.1e-72 276.2 167 82.6
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 5.7e-62 241.5 159 76.1
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 3.7e-61 238.8 167 72.5
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 8.2e-61 237.7 167 70.1
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 1.8e-60 236.5 165 70.9
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 2.4e-60 236.1 163 72.4
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 5.3e-60 235.0 164 69.5
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 2.0e-59 233.0 165 68.5
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 7.6e-59 231.1 165 69.1
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 7.6e-59 231.1 164 69.5
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 7.6e-59 231.1 165 69.7
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 1.7e-58 229.9 165 67.9
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 1.7e-58 229.9 165 69.7
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 2.9e-58 229.2 165 67.9
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 2.9e-58 229.2 165 69.7
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 5.0e-58 228.4 164 68.9
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 6.5e-58 228.0 164 68.9
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 8.5e-58 227.6 165 66.1
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 8.5e-58 227.6 165 66.1
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 8.5e-58 227.6 164 66.5
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 8.5e-58 227.6 164 67.7
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 1.1e-57 227.3 164 68.9
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 1.1e-57 227.3 165 68.5
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 1.9e-57 226.5 167 68.3
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 2.5e-57 226.1 164 68.9
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.5e-57 226.1 164 65.9
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 2.5e-57 226.1 164 65.9
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 2.5e-57 226.1 164 66.5
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 2.5e-57 226.1 165 69.1
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 3.2e-57 225.7 164 68.9
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 3.2e-57 225.7 164 65.2
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 4.2e-57 225.3 164 67.7
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 4.2e-57 225.3 164 67.1
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 7.2e-57 224.6 164 68.3
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 7.2e-57 224.6 164 67.7
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 9.3e-57 224.2 165 67.9
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 9.3e-57 224.2 165 66.7
Gohir.A09G052700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.2e-56 223.8 164 65.9
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 1.2e-56 223.8 164 67.1
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 1.2e-56 223.8 164 67.7
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 1.6e-56 223.4 164 67.7
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 1.6e-56 223.4 164 66.5
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.6e-56 223.4 167 66.5
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 2.1e-56 223.0 165 66.7
vmacro10235 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 2.1e-56 223.0 114 87.7
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 2.7e-56 222.6 164 65.9
CARHR134470 Cardamine hirsuta HOM05D004167 ORTHO05D005012 3.6e-56 222.2 164 66.5
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 6.1e-56 221.5 164 65.2
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 7.9e-56 221.1 165 67.3
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 1.8e-55 219.9 164 65.2
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 1.8e-55 219.9 172 62.8
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.8e-55 219.9 162 67.9
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 1.8e-55 219.9 164 68.3
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 1.8e-55 219.9 164 66.5
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 2.3e-55 219.5 164 66.5
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 3.9e-55 218.8 164 65.9
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 3.9e-55 218.8 164 65.9
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 3.9e-55 218.8 164 65.9
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 5.1e-55 218.4 153 69.9
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 5.1e-55 218.4 165 67.3
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 6.7e-55 218.0 161 68.3
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 6.7e-55 218.0 162 65.4
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 8.7e-55 217.6 161 63.4
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 1.1e-54 217.2 163 66.3
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 1.5e-54 216.9 164 65.9
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 1.5e-54 216.9 167 66.5
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 1.5e-54 216.9 164 65.9
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 1.9e-54 216.5 164 67.1
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 1.9e-54 216.5 164 67.1
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.9e-54 216.5 165 66.7
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 1.9e-54 216.5 165 66.1
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 2.5e-54 216.1 161 65.8
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 3.3e-54 215.7 165 66.1
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 3.3e-54 215.7 161 64.6
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 3.3e-54 215.7 161 64.6
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 4.3e-54 215.3 165 65.5
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 4.3e-54 215.3 164 64.0
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 4.3e-54 215.3 164 65.2
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 5.7e-54 214.9 164 64.6
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 5.7e-54 214.9 165 66.1
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 7.4e-54 214.5 157 69.4
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 7.4e-54 214.5 165 66.1
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 7.4e-54 214.5 165 66.1
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 7.4e-54 214.5 165 66.1
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 7.4e-54 214.5 161 64.0
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 9.7e-54 214.2 164 66.5
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 1.3e-53 213.8 164 64.6
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 2.8e-53 212.6 164 64.6
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 3.7e-53 212.2 164 65.9
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 3.7e-53 212.2 160 66.9
BcaC01g05486 Brassica carinata HOM05D004167 ORTHO05D005012 4.8e-53 211.8 164 65.9
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 4.8e-53 211.8 164 65.9
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 6.3e-53 211.5 157 68.8
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 2.4e-52 209.5 163 63.8
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 9.1e-52 207.6 162 63.6
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 1.5e-51 206.8 158 64.6
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 3.4e-51 205.7 164 65.2
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 3.4e-51 205.7 164 65.2
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 5.9e-51 204.9 153 68.6
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 7.7e-51 204.5 158 64.6
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 2.2e-50 203.0 161 63.4
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 5.0e-50 201.8 148 67.6
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 1.4e-49 200.3 164 60.4
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 3.2e-49 199.1 157 63.7
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 3.2e-49 199.1 175 60.0
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 7.2e-49 198.0 191 54.5
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 1.0e-47 194.1 164 58.5
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 1.5e-46 190.3 163 58.3
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 3.3e-46 189.1 166 56.6
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 1.3e-45 187.2 163 57.7
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 2.2e-45 186.4 159 58.5
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 8.2e-45 184.5 179 55.3
MSTRG.8242 Avicennia marina HOM05D004167 ORTHO05D005012 3.1e-44 182.6 101 82.2
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 4.1e-44 182.2 142 63.4
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 2.0e-43 179.9 138 64.5
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 3.8e-42 175.6 160 55.6
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 6.5e-42 174.9 155 59.4
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 3.2e-41 172.6 164 54.3
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 4.2e-41 172.2 110 68.2
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 7.2e-41 171.4 155 57.4
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 4.7e-40 168.7 155 60.0
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 4.7e-40 168.7 109 68.8
BraA02t07167Z Brassica rapa HOM05D004167 ORTHO05D005012 7.9e-40 167.9 164 55.5
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 1.8e-39 166.8 154 54.5
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 4.1e-36 155.6 82 84.1
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 7.0e-36 154.8 126 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 1.7e-34 150.2 158 49.4
Hma1.2p1_0683F.1_g202820 Hydrangea macrophylla HOM05D004167 ORTHO05D005012 6.5e-34 148.3 128 60.2
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 4.2e-33 145.6 119 63.0
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 4.4e-30 135.6 131 52.7
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 6.3e-29 131.7 115 53.9
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 9.4e-25 117.9 104 59.6
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 3.6e-24 115.9 105 59.0
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 1.4e-23 114.0 140 37.9
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 3.0e-23 112.8 106 45.3
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 3.4e-22 109.4 111 45.9
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 4.4e-22 109.0 104 56.7
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 8.3e-21 104.8 105 57.1
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 7.0e-20 101.7 98 57.1
SHI22568 Sapria himalayana HOM05D004167 ORTHO05D005012 1.6e-19 100.5 66 65.2
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 2.0e-19 100.1 107 52.3
Cfa024819 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.3e-18 97.4 121 38.0
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 3.2e-17 92.8 91 60.4
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 1.4e-15 87.4 115 39.1
SHI22567 Sapria himalayana HOM05D004167 ORTHO05D005012 2.3e-15 86.7 96 50.0
EL10Ac2g03543 Beta vulgaris HOM05D004167 ORTHO05D005012 4.0e-15 85.9 135 42.2
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 3.3e-09 66.2 86 48.8
arahy.Tifrunner.gnm1.ann1.I9KCKB Arachis hypogaea HOM05D001644 ORTHO05D001641 4.7e-08 62.4 33 78.8
EL10Ac5g11410 Beta vulgaris HOM05D004167 ORTHO05D005012 3.4e-06 56.2 61 52.5


User provided reference genes

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