Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.0e-116 422.2 264 100.0
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 6.2e-69 265.0 361 49.3
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 9.5e-62 241.1 360 46.7
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.1e-49 198.4 128 87.5
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.3e-46 189.5 314 39.5
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.1e-45 186.8 336 43.5
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 5.2e-44 182.2 379 42.0
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 8.9e-44 181.4 329 38.3
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.5e-43 180.6 335 38.8
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 9.9e-43 177.9 333 37.2
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.8e-42 176.0 335 37.6
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 3.8e-42 176.0 335 37.6
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 4.9e-42 175.6 313 39.0
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 8.4e-42 174.9 332 37.0
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 3.2e-41 172.9 362 36.5
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 9.3e-41 171.4 362 35.9
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 9.3e-41 171.4 362 40.1
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.1e-40 170.2 332 38.0
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.7e-40 169.9 338 37.6
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.6e-40 169.1 336 37.8
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 6.0e-40 168.7 342 36.8
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.0e-40 168.7 342 37.7
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.0e-40 168.7 342 36.8
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 6.6e-39 165.2 338 36.7
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 8.7e-39 164.9 340 36.5
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.1e-38 164.5 341 41.6
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.1e-38 164.5 341 41.6
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 9.6e-38 161.4 330 36.7
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.3e-37 161.0 335 34.0
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.3e-37 161.0 337 35.9
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.6e-37 160.6 375 34.4
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.8e-37 159.8 194 48.5
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 1.1e-36 157.9 336 36.0
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.1e-36 157.9 342 35.7
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.1e-36 157.9 368 34.5
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.4e-36 157.5 334 35.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.4e-36 157.5 331 35.3
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 2.4e-36 156.8 342 36.3
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.4e-36 156.8 342 36.3
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 3.1e-36 156.4 326 34.0
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 6.9e-36 155.2 360 39.7
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 9.0e-36 154.8 331 36.0
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 9.0e-36 154.8 362 34.8
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 9.0e-36 154.8 362 34.8
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 2.0e-35 153.7 347 33.7
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 2.6e-35 153.3 344 33.7
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.6e-35 153.3 310 36.8
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 2.6e-35 153.3 336 34.8
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.5e-35 152.5 332 35.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 4.5e-35 152.5 331 40.2
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 7.6e-35 151.8 322 36.3
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 2.2e-34 150.2 328 36.6
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.9e-34 149.8 322 36.0
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.8e-34 149.4 338 33.7
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.8e-34 149.4 331 32.9
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 4.9e-34 149.1 326 35.6
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 4.9e-34 149.1 326 35.6
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 4.9e-34 149.1 343 36.7
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 6.4e-34 148.7 111 84.7
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 8.4e-34 148.3 320 35.9
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 8.4e-34 148.3 320 35.9
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.1e-33 147.9 336 33.9
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.4e-33 147.5 341 36.1
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.9e-33 147.1 341 38.7
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 3.2e-33 146.4 308 35.7
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 4.2e-33 146.0 365 32.9
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 4.2e-33 146.0 362 34.0
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.2e-33 146.0 333 41.7
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 4.2e-33 146.0 370 34.1
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 4.2e-33 146.0 340 33.8
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.2e-32 144.4 338 35.8
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 2.7e-32 143.3 188 45.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.7e-32 143.3 351 34.5
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 4.6e-32 142.5 326 34.0
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 7.9e-32 141.7 343 32.7
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 2.3e-31 140.2 376 31.1
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.9e-31 139.4 335 33.4
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 5.1e-31 139.0 338 33.7
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 5.1e-31 139.0 318 34.6
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 5.1e-31 139.0 329 39.2
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 5.1e-31 139.0 339 33.3
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.9e-30 137.1 334 31.4
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.5e-30 136.7 324 40.7
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.5e-30 136.7 328 32.0
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 4.3e-30 136.0 308 32.1
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 5.6e-30 135.6 334 32.9
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 7.4e-30 135.2 324 33.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.6e-29 134.0 324 31.8
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.8e-29 133.3 342 33.0
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.6e-29 132.9 324 35.2
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 8.1e-29 131.7 284 35.6
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.1e-28 131.3 365 31.8
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.4e-28 131.0 362 32.3
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 2.4e-28 130.2 325 32.6
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 3.1e-28 129.8 320 34.4
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 4.0e-28 129.4 339 33.0
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 6.9e-28 128.6 328 34.1
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 6.9e-28 128.6 339 33.6
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 9.0e-28 128.3 162 47.5
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.2e-27 127.9 271 36.5
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.5e-27 127.5 335 32.5
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 3.4e-27 126.3 339 33.3
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 3.4e-27 126.3 333 32.1
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 4.5e-27 125.9 371 35.0
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 9.9e-27 124.8 332 34.0
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 9.9e-27 124.8 332 34.0
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 8.4e-26 121.7 259 33.6
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 8.4e-26 121.7 374 35.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.1e-25 121.3 369 30.9
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.1e-25 121.3 342 34.2
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.4e-25 120.9 240 45.4
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.4e-25 120.9 340 33.8
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.9e-25 120.6 362 30.1
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 3.2e-25 119.8 365 30.7
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 5.5e-25 119.0 364 31.6
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 9.3e-25 118.2 219 35.2
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 2.1e-24 117.1 373 29.0
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 3.9e-23 112.8 329 31.0
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.9e-22 110.5 348 29.3
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 9.6e-22 108.2 335 35.2
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 3.7e-21 106.3 349 28.4
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 6.2e-21 105.5 270 32.6
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.0e-19 100.5 129 46.5
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 2.0e-19 100.5 363 28.1
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 2.0e-19 100.5 352 28.1
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.5e-17 93.6 278 32.0
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 9.3e-17 91.7 333 32.4
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 2.1e-16 90.5 339 31.3
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 3.0e-15 86.7 112 50.0
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 3.0e-15 86.7 173 34.1
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 5.1e-15 85.9 389 31.9
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.5e-14 84.3 274 27.4
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 5.7e-14 82.4 116 48.3
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.6e-13 80.9 331 28.4
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.8e-13 80.1 255 36.9
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 9.0e-12 75.1 181 34.3
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 5.9e-11 72.4 194 40.2
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 7.6e-11 72.0 214 32.7
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 5.0e-10 69.3 91 47.3
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 1.6e-08 64.3 131 58.8
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.5e-06 57.8 324 31.5
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 2.5e-06 57.0 43 53.5
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 5.7e-06 55.8 43 53.5


User provided reference genes

Program Settings