Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.3e-109 399.1 226 100.0
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 9.6e-87 323.9 203 93.1
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.3e-64 250.4 233 64.4
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 2.8e-62 242.7 231 61.0
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 3.9e-56 222.2 233 56.2
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 2.1e-54 216.5 245 54.7
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 4.3e-47 192.2 235 51.1
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.1e-42 177.6 227 48.0
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.6e-41 173.7 235 48.5
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 2.7e-41 172.9 236 47.9
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 4.6e-41 172.2 235 46.8
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 4.6e-41 172.2 235 47.7
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 6.1e-41 171.8 235 47.2
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 6.1e-41 171.8 235 47.7
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.0e-40 171.0 236 47.5
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.8e-40 170.2 236 47.5
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 3.9e-40 169.1 235 48.1
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 3.9e-40 169.1 225 49.8
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 3.9e-40 169.1 235 48.9
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 6.7e-40 168.3 235 46.4
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 6.7e-40 168.3 235 46.0
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 8.8e-40 167.9 235 47.7
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.1e-39 167.5 225 49.8
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 3.3e-39 166.0 236 47.0
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 5.7e-39 165.2 230 48.7
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 7.4e-39 164.9 235 45.5
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.7e-38 163.7 235 46.4
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.7e-38 163.7 235 46.4
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.8e-38 162.9 235 45.1
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.8e-38 162.9 228 49.6
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 4.8e-38 162.2 237 44.7
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.8e-38 162.2 236 47.5
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.8e-38 162.2 230 46.5
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.2e-38 161.4 236 47.5
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 8.2e-38 161.4 233 45.9
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 2.4e-37 159.8 226 47.8
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 2.4e-37 159.8 230 48.3
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 2.4e-37 159.8 235 44.7
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 3.1e-37 159.5 230 48.3
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 3.1e-37 159.5 239 45.2
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 4.1e-37 159.1 235 45.5
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 5.3e-37 158.7 235 46.8
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 5.3e-37 158.7 235 46.8
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 5.3e-37 158.7 228 46.9
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 5.3e-37 158.7 228 46.9
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 5.3e-37 158.7 234 49.1
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.2e-36 157.5 239 43.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 1.2e-36 157.5 242 45.0
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.5e-36 157.1 232 48.7
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.5e-36 157.1 232 45.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.5e-36 157.1 235 46.0
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 2.0e-36 156.8 235 45.5
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 2.0e-36 156.8 235 45.1
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 2.6e-36 156.4 235 46.4
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 2.6e-36 156.4 235 44.7
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 5.9e-36 155.2 235 46.4
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 5.9e-36 155.2 235 46.4
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.0e-35 154.5 242 43.8
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.0e-35 154.5 245 46.1
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.3e-35 154.1 233 45.5
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.3e-35 154.1 232 44.4
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-35 154.1 235 45.5
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 2.2e-35 153.3 235 45.1
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.9e-35 152.9 237 46.4
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 6.5e-35 151.8 235 46.0
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 8.5e-35 151.4 202 51.5
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 8.5e-35 151.4 233 48.5
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 8.5e-35 151.4 245 42.9
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.1e-34 151.0 236 44.5
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.9e-34 150.2 232 44.0
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.9e-34 150.2 236 43.6
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 3.2e-34 149.4 235 44.3
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 5.5e-34 148.7 234 44.4
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 5.5e-34 148.7 235 46.4
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.2e-33 147.5 233 43.3
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.6e-33 147.1 235 42.1
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.7e-33 146.4 233 44.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 2.7e-33 146.4 233 44.6
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 2.7e-33 146.4 238 47.1
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 3.6e-33 146.0 193 49.2
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 3.6e-33 146.0 234 43.6
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 7.9e-33 144.8 230 43.0
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 7.9e-33 144.8 233 44.2
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 7.9e-33 144.8 236 42.8
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 7.9e-33 144.8 264 42.4
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 1.0e-32 144.4 233 44.2
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 2.3e-32 143.3 241 43.2
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 3.0e-32 142.9 239 44.4
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 3.9e-32 142.5 249 42.2
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.1e-31 141.0 211 45.0
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 5.7e-31 138.7 189 49.7
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.3e-30 137.5 232 45.3
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 2.8e-30 136.3 189 47.6
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 3.7e-30 136.0 120 62.5
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 8.2e-30 134.8 256 40.6
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.4e-29 134.0 238 39.9
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 1.1e-26 124.4 237 39.2
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 4.2e-26 122.5 181 44.2
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.6e-25 120.6 232 39.7
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 3.6e-25 119.4 232 40.5
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 4.0e-24 115.9 235 39.6
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 2.2e-22 110.2 261 35.2
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 2.4e-21 106.7 165 44.2
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 4.5e-20 102.4 234 37.6
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 3.6e-17 92.8 166 42.2
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-14 84.3 66 68.2
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 2.7e-12 76.6 165 36.4
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.0e-11 74.7 77 58.4
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 1.3e-11 74.3 90 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 5.5e-10 68.9 191 31.9
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 7.2e-10 68.6 203 31.5
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 6.1e-09 65.5 137 39.4
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.2e-08 62.4 69 52.2
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 6.8e-08 62.0 59 59.3
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 5.7e-07 58.9 70 48.6


User provided reference genes

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