Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 4497.2 2355 100.0
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 3944.4 2355 89.9
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 3357.8 2396 76.3
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 3026.9 2344 71.4
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2615.1 2235 63.5
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2592.8 2140 64.8
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2567.3 2124 64.8
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2566.6 2130 64.1
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2562.3 2228 62.0
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2509.9 2272 60.8
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2506.9 2353 59.8
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2497.2 2192 62.5
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2491.5 2250 60.0
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2488.8 2117 62.6
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2477.6 1928 67.4
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2476.4 2313 59.0
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2474.5 2183 61.5
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2473.4 2123 62.8
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2451.8 2242 59.8
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2445.2 2243 59.7
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2441.4 2268 59.3
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2440.6 2239 59.4
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2435.2 2133 61.4
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2394.4 2201 59.1
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2393.2 2197 58.8
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2391.7 2226 58.8
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2385.5 2220 59.0
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2379.0 2179 59.7
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2370.1 2184 59.8
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2368.6 2214 59.6
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2358.2 2178 59.1
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2356.3 2264 57.1
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2347.4 2229 57.3
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2334.7 2082 60.6
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2331.2 2245 57.1
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2330.4 2181 59.0
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2330.1 2238 57.2
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2326.6 2318 56.6
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2318.1 2181 58.6
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2310.8 2272 56.7
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2310.8 2253 56.2
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2309.6 2075 60.6
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2300.4 2182 57.5
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2298.5 2071 59.6
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2296.2 2466 53.5
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2288.5 2159 58.2
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2281.9 2075 59.3
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2267.7 1666 70.0
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2259.6 2134 57.5
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2238.4 2289 54.9
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2235.7 2255 54.8
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2231.4 2190 57.1
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2223.0 2236 56.2
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2219.1 2070 58.5
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2219.1 2070 58.5
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2211.4 2095 57.7
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2204.5 2235 55.1
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2201.0 2167 56.2
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2193.3 2250 54.7
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2191.4 2197 55.6
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2191.4 2250 54.8
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2186.0 2382 53.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2185.6 2196 55.3
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2182.5 2228 54.8
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2177.9 2158 55.4
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2172.1 2244 54.7
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2160.6 2390 52.4
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2147.9 2013 58.3
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 2092.4 2166 53.7
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 2088.9 1947 57.5
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2078.5 1492 71.8
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2023.1 2195 52.5
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1943.3 3048 41.7
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1892.9 2150 50.7
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1856.3 2199 49.8
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1776.1 1754 56.6
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1662.5 1809 52.7
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1654.4 1124 74.9
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1654.0 1787 51.7
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1589.7 2071 45.6
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1548.1 1859 49.6
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1503.8 2338 40.9
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1469.5 2361 40.3
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1397.9 919 77.7
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1368.2 1393 54.9
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1265.8 2071 39.1
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1215.3 2093 38.1
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1201.8 2110 37.1
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1184.9 1594 44.0
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1149.8 1030 59.9
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1105.9 2177 35.4
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1090.1 1038 59.2
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 2.2e-295 1020.4 1429 45.5
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 2.0e-291 1007.3 886 61.2
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.5e-288 997.7 824 61.5
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.2e-267 928.3 578 85.1
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.8e-257 894.4 1052 49.1
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 8.9e-236 822.4 1309 41.2
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 7.6e-211 739.6 1039 43.7
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 4.8e-205 720.3 721 54.0
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 1.5e-198 698.7 807 48.9
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-177 629.4 444 74.3
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 9.4e-177 626.3 431 73.1
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.3e-175 621.7 894 42.4
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 1.5e-174 619.0 1010 41.3
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 4.5e-163 580.9 434 69.4
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.3e-154 552.7 383 72.8
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 6.3e-149 533.9 379 71.2
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 6.6e-138 497.3 413 61.7
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.5e-110 406.4 288 70.1
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.2e-107 396.7 362 62.7
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.0e-106 393.7 264 76.5
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.7e-106 392.9 809 34.4
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 4.8e-104 384.8 876 32.3
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 4.5e-94 351.7 294 60.5
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 8.4e-85 320.9 1506 25.8
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 2.5e-81 309.3 286 60.5
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 1.7e-77 296.6 567 35.8
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.9e-73 283.1 1804 22.9
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.6e-67 263.5 315 50.5
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 1.7e-61 243.4 422 41.2
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 1.2e-59 237.3 162 73.5
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 5.9e-54 218.4 169 69.2
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 5.0e-53 215.3 157 72.0
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 7.2e-52 211.5 172 68.0
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.4e-50 207.2 440 37.7
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 7.5e-49 201.4 180 65.0
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 7.5e-49 201.4 180 65.0
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 7.5e-49 201.4 187 62.6
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 7.5e-49 201.4 180 65.0
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 6.3e-48 198.4 128 77.3
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 4.1e-47 195.7 354 41.2
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.3e-42 179.9 122 73.8
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 5.5e-36 158.7 129 68.2
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 9.4e-36 157.9 323 35.6
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 5.7e-33 148.7 280 37.1
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-28 133.3 116 66.4
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.2e-26 125.6 195 40.0
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 2.6e-25 123.2 167 47.3
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 2.9e-24 119.8 87 65.5
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 1.1e-23 117.9 1216 20.6
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.1e-23 115.9 69 84.1
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 2.7e-22 113.2 168 45.8
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 3.5e-22 112.8 218 38.1
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 2.3e-21 110.2 75 72.0
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.9e-18 98.2 101 60.4
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 4.4e-17 95.9 61 65.6
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 9.8e-17 94.7 592 24.5
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 2.2e-16 93.6 70 70.0
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 2.9e-16 93.2 54 70.4
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.9e-16 92.4 54 77.8
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 1.4e-15 90.9 54 92.6
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.4e-15 90.1 65 67.7
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 3.2e-15 89.7 57 82.5
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 3.2e-15 89.7 75 61.3
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.0e-14 85.5 62 69.4
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 7.8e-14 85.1 94 51.1
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 5.0e-13 82.4 72 58.3
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 5.0e-13 82.4 57 70.2
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 8.6e-13 81.6 56 66.1
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 1.1e-12 81.3 57 70.2
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 7.3e-12 78.6 70 60.0
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.6e-11 77.4 50 74.0
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 3.6e-11 76.3 67 70.1
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 1.1e-10 74.7 115 39.1
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 1.1e-10 74.7 51 70.6
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.4e-10 74.3 69 56.5
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.0e-10 72.8 42 88.1
Hund29189 Selenicereus undatus HOM05D008000 ORTHO05D000006 5.2e-10 72.4 71 54.9
Hund29191 Selenicereus undatus HOM05D008000 ORTHO05D000006 5.2e-10 72.4 71 54.9
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 6.8e-10 72.0 153 33.3
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 2.6e-09 70.1 91 44.0
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 1.7e-08 67.4 110 37.3
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 2.4e-07 63.5 461 23.9
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 5.4e-07 62.4 61 57.4
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 4.6e-06 59.3 63 52.4
Lsat_1_v5_gn_4_161940 Lactuca sativa HOM05D003845 ORTHO05D004161 6.0e-06 58.9 36 75.0
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 6.0e-06 58.9 38 73.7


User provided reference genes

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