Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 3134.0 1641 100.0
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 2912.9 1693 90.8
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2398.2 1683 77.7
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 2130.5 1672 70.7
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1992.2 1684 64.7
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1690.6 1669 58.1
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 1553.9 1704 54.3
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 1551.6 1735 52.8
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 1516.5 1723 53.2
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 1516.1 1693 53.4
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1508.4 1668 52.7
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 1495.3 1699 52.3
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 1494.6 1702 52.4
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 1491.1 1692 52.8
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 1458.7 1648 54.1
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1458.4 1693 52.1
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 1453.3 1695 51.7
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1445.3 1696 51.7
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 1437.9 1703 51.5
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 1431.0 1698 50.8
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1429.5 1703 51.0
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 1419.8 1721 50.0
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1415.6 1702 50.4
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1405.6 1702 50.4
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1405.6 1700 50.2
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 1402.9 1692 50.3
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 1402.9 1699 51.0
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1400.2 1692 50.1
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1399.4 1692 50.4
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1398.3 1692 49.8
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 1397.9 1694 49.9
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1397.1 1692 49.9
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 1383.2 1701 49.2
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1381.7 1701 50.4
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1381.3 1709 49.3
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 1377.5 1719 48.5
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 1375.9 1703 49.6
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 1371.7 1696 50.4
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 1371.7 1701 48.9
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1367.1 1702 49.5
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1360.1 1708 49.6
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 1359.4 1698 49.1
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1356.7 1699 48.1
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 1353.2 1706 49.2
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1339.3 1690 47.8
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 1334.3 1700 47.5
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1328.5 1687 47.4
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1327.4 1708 48.7
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 1324.7 1696 47.2
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1322.8 1707 47.5
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1315.4 1710 48.9
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1307.0 1732 46.8
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1302.3 1692 47.5
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 1301.6 1703 47.4
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1287.3 1537 50.0
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 1285.0 1554 49.0
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1280.4 1627 47.3
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1273.8 1731 46.0
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1266.1 1699 46.5
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1257.3 1694 47.5
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 1252.7 1720 45.4
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 1245.3 1699 46.0
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1239.6 1690 46.2
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1234.6 1687 45.9
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1229.2 1658 47.0
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1207.2 1703 45.6
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1206.4 1715 45.1
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1168.7 1529 45.8
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1162.9 1662 44.6
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1155.6 1689 43.8
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1148.7 1508 46.8
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1145.6 1741 42.0
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1124.0 1686 43.6
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1092.8 1694 42.4
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 5.7e-298 1028.5 1718 42.0
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 3.3e-277 959.5 1502 39.8
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 2.9e-273 946.4 1013 55.6
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 5.8e-266 922.2 1130 48.8
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 6.4e-249 865.5 1321 40.9
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 3.3e-245 853.2 1118 49.1
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 7.3e-245 852.0 1295 41.9
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 8.1e-236 822.0 1026 47.0
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 1.1e-224 785.0 1083 43.9
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 6.9e-211 739.2 1395 35.2
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 1.3e-206 724.9 1800 33.9
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 1.5e-184 651.7 1771 32.3
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 8.8e-182 642.5 880 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.9e-168 598.2 1478 30.8
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 3.0e-153 547.7 1291 30.4
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 8.6e-153 546.2 647 49.1
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 2.2e-100 372.1 549 48.1
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 5.5e-91 340.9 481 45.1
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 7.9e-90 337.0 531 39.5
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.1e-86 326.6 2041 23.5
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.4e-81 309.7 342 52.9
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 1.7e-68 266.2 372 54.8
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.7e-66 258.8 343 45.2
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 4.4e-64 251.5 339 52.8
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 2.8e-63 248.8 295 60.0
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 1.0e-41 177.2 149 60.4
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 4.9e-39 168.3 153 64.7
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.4e-38 166.8 153 64.1
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 2.3e-36 159.5 184 50.0
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 6.8e-33 147.9 208 51.0
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 1.7e-28 133.3 133 60.9
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 3.9e-28 132.1 302 43.4
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 6.4e-23 114.8 170 46.5
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 1.2e-21 110.5 135 50.4
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.7e-20 106.7 75 69.3
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.2e-16 94.0 360 38.1
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 7.6e-16 91.3 188 37.8
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 2.2e-15 89.7 72 61.1
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 1.6e-10 73.6 85 48.2
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 6.2e-10 71.6 74 71.6
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 4.0e-09 68.9 65 53.8
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 9.0e-09 67.8 66 59.1
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 2.0e-08 66.6 83 42.2
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 2.6e-08 66.2 41 78.0
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 9.9e-08 64.3 41 70.7
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 2.9e-07 62.8 40 72.5
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 1.1e-06 60.8 49 63.3


User provided reference genes

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