Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 7.0e-209 730.3 359 100.0
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 2.7e-136 489.2 376 66.0
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 7.7e-131 471.1 354 65.3
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 1.6e-128 463.4 438 56.8
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 4.5e-115 418.7 352 60.8
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 3.6e-104 382.5 306 61.1
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.4e-103 380.6 331 57.1
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 2.0e-102 376.7 298 61.4
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 2.0e-102 376.7 331 56.8
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 7.5e-102 374.8 333 56.5
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 1.3e-101 374.0 357 54.9
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 1.7e-101 373.6 299 60.2
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 2.8e-101 372.9 342 53.5
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.4e-100 370.5 358 53.9
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 2.0e-99 366.7 303 58.4
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 5.9e-99 365.2 332 54.5
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 5.9e-99 365.2 300 57.3
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 1.0e-98 364.4 326 57.7
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 2.3e-98 363.2 342 53.2
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 2.9e-98 362.8 320 56.2
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 3.9e-98 362.5 315 56.8
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 3.9e-98 362.5 303 59.4
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 8.6e-98 361.3 330 53.6
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 1.5e-97 360.5 300 58.3
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 1.5e-97 360.5 351 52.4
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 1.9e-97 360.1 312 56.1
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 1.9e-97 360.1 302 56.3
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 2.5e-97 359.8 332 54.5
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 5.6e-97 358.6 329 54.4
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 7.3e-97 358.2 301 58.1
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 7.3e-97 358.2 327 54.4
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 9.5e-97 357.8 347 53.6
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 1.6e-96 357.1 297 57.9
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 4.7e-96 355.5 329 53.8
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 8.0e-96 354.8 363 51.0
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 1.0e-95 354.4 361 50.4
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 2.3e-95 353.2 302 56.0
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 3.1e-95 352.8 331 54.4
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 3.1e-95 352.8 299 58.2
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 3.1e-95 352.8 305 57.0
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 5.2e-95 352.1 296 58.8
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 1.5e-94 350.5 344 52.6
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.5e-94 350.5 300 56.0
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 2.0e-94 350.1 331 54.4
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 2.0e-94 350.1 298 57.0
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 2.6e-94 349.7 320 54.7
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 2.6e-94 349.7 300 57.0
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 3.4e-94 349.4 355 51.5
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 5.8e-94 348.6 305 57.4
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 5.8e-94 348.6 304 55.6
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.3e-93 347.4 352 51.1
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 1.7e-93 347.1 299 57.2
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 3.7e-93 345.9 317 52.4
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 3.2e-92 342.8 322 53.7
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 3.2e-92 342.8 294 55.4
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 9.2e-92 341.3 361 50.1
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 9.2e-92 341.3 300 56.0
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 1.2e-91 340.9 300 56.7
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 1.6e-91 340.5 310 54.5
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 2.0e-91 340.1 298 56.4
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 2.0e-91 340.1 333 51.1
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 3.5e-91 339.3 297 54.5
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.3e-90 337.4 367 49.3
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 1.7e-90 337.0 324 51.2
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 8.6e-90 334.7 335 50.7
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 1.5e-89 334.0 328 52.1
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 1.5e-89 334.0 399 47.9
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 1.9e-89 333.6 278 59.7
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 4.3e-89 332.4 300 55.7
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 4.3e-89 332.4 299 53.8
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 1.2e-88 330.9 274 58.4
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.1e-87 327.8 243 59.7
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.8e-87 327.0 169 96.4
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.8e-87 327.0 285 54.4
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 3.1e-87 326.2 298 56.4
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 8.9e-87 324.7 276 56.2
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 2.0e-86 323.6 351 47.6
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 1.4e-84 317.4 360 48.1
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.4e-84 317.4 299 53.5
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 1.9e-84 317.0 296 53.4
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 3.2e-84 316.2 326 50.6
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 2.7e-83 313.2 304 52.3
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 6.0e-83 312.0 302 52.3
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 7.8e-83 311.6 301 52.2
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 3.0e-82 309.7 306 50.3
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 1.1e-81 307.8 299 51.5
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 2.1e-80 303.5 264 58.3
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 2.1e-80 303.5 296 50.3
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.4e-78 296.2 244 57.4
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.9e-77 293.1 244 56.6
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 7.1e-76 288.5 251 58.6
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 1.2e-75 287.7 238 59.7
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 2.7e-75 286.6 260 53.8
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 3.5e-75 286.2 331 46.5
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 9.9e-70 268.1 336 42.9
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 1.7e-66 257.3 296 45.9
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 3.1e-63 246.5 307 45.9
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 2.2e-61 240.4 303 43.9
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 6.0e-59 232.3 313 42.2
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 7.8e-59 231.9 191 61.3
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 5.1e-58 229.2 296 42.9
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 4.9e-53 212.6 213 52.1
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 1.1e-52 211.5 298 40.3
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 1.0e-45 188.3 390 33.1
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 1.7e-45 187.6 341 33.7
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 2.2e-45 187.2 286 40.6
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 2.2e-32 144.1 216 37.5
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 3.7e-24 116.7 329 31.0
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 8.2e-24 115.5 184 38.6
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 3.1e-23 113.6 106 50.0
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 3.1e-23 113.6 102 50.0
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 5.0e-21 106.3 116 44.0
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.2e-20 103.6 119 42.9
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 1.5e-12 78.2 55 63.6
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 1.2e-06 58.5 56 46.4


User provided reference genes

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