Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.6e-249 864.0 492 100.0
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.9e-236 822.4 493 92.9
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.0e-234 816.6 493 92.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 8.5e-173 610.9 493 73.2
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.4e-159 565.1 539 61.2
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.5e-153 547.0 522 59.2
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.7e-152 543.5 499 65.3
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.7e-141 506.9 519 60.7
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 3.0e-125 453.0 551 55.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.8e-122 443.7 544 54.2
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 4.4e-121 439.1 535 54.0
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 2.4e-119 433.3 549 53.6
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 3.5e-118 429.5 537 54.7
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.3e-117 427.6 516 55.6
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.9e-117 426.0 537 49.2
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 4.3e-116 422.5 542 48.5
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.3e-116 422.5 540 51.5
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.3e-116 421.8 546 54.0
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.3e-115 421.0 547 49.9
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 4.8e-115 419.1 542 48.2
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 6.2e-115 418.7 542 53.7
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.1e-114 417.9 535 51.2
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.4e-114 416.8 546 51.1
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.4e-114 416.8 549 51.4
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.3e-114 415.6 536 49.1
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 5.3e-114 415.6 536 49.1
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 6.9e-114 415.2 554 47.5
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 2.0e-113 413.7 548 53.3
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.8e-113 412.1 537 49.3
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.8e-113 412.1 508 51.4
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.8e-113 412.1 555 50.8
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 9.9e-113 411.4 507 55.0
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 9.9e-113 411.4 536 48.7
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 9.9e-113 411.4 551 48.1
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 8.4e-112 408.3 555 47.2
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 8.4e-112 408.3 537 48.4
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.9e-111 407.1 524 51.9
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.4e-111 406.8 541 52.7
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 3.5e-110 402.9 533 53.8
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.0e-109 401.4 521 53.2
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.0e-109 401.4 540 53.0
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.0e-109 401.4 527 49.0
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.3e-109 401.0 517 55.1
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.9e-109 399.4 597 47.7
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 5.1e-109 399.1 531 51.2
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 5.1e-109 399.1 527 48.0
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.9e-108 397.1 527 47.8
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 4.3e-108 396.0 547 51.7
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 7.3e-108 395.2 538 53.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 9.6e-108 394.8 530 53.2
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.3e-107 394.4 561 49.0
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.3e-107 394.4 549 51.7
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 5.3e-106 389.0 561 48.5
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 9.0e-106 388.3 479 51.6
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 9.0e-106 388.3 549 51.0
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.3e-104 384.4 517 48.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.3e-104 384.4 547 49.5
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.3e-104 384.4 537 49.5
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.3e-104 384.4 539 49.2
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.7e-104 384.0 544 51.8
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.2e-104 383.6 544 50.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 2.9e-104 383.3 556 45.0
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.9e-104 383.3 543 52.1
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 4.2e-103 379.4 544 46.5
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.6e-102 377.5 518 49.6
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 2.3e-101 373.6 470 50.4
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 2.3e-101 373.6 513 46.0
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 3.9e-101 372.9 529 53.7
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.7e-101 372.1 544 47.8
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.5e-100 370.9 548 50.2
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.9e-100 370.5 526 52.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.5e-100 370.2 546 52.2
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 3.3e-100 369.8 519 48.0
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 7.4e-100 368.6 529 46.7
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 9.6e-100 368.2 524 49.6
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 4.8e-99 365.9 539 50.6
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.8e-98 364.0 529 53.5
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.0e-96 358.2 521 51.2
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.7e-96 357.5 623 44.9
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 8.4e-96 355.1 534 49.6
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.1e-95 354.8 509 45.0
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.6e-94 350.9 558 45.5
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.0e-93 348.2 528 50.0
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.0e-93 348.2 532 47.6
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.0e-93 348.2 488 47.5
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.3e-93 347.1 531 49.5
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 3.9e-93 346.3 538 45.0
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 3.9e-93 346.3 519 48.7
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 5.1e-93 345.9 515 49.5
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 3.3e-92 343.2 524 50.0
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.3e-91 341.3 552 42.9
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 2.1e-91 340.5 526 49.2
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-90 337.8 523 48.6
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 3.1e-90 336.7 520 48.7
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 3.1e-90 336.7 521 47.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.0e-90 336.3 520 48.3
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 4.0e-90 336.3 420 49.0
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 9.0e-90 335.1 519 46.8
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 2.0e-89 334.0 542 45.4
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 7.6e-89 332.0 540 44.4
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.0e-88 331.6 535 44.1
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 6.5e-88 328.9 519 44.3
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 7.1e-87 325.5 526 47.3
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 7.1e-87 325.5 526 47.3
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 2.1e-86 323.9 517 48.0
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.8e-85 320.9 516 44.2
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 5.9e-81 305.8 531 43.3
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 5.9e-81 305.8 549 41.0
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.7e-80 304.3 564 38.7
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 3.1e-74 283.5 640 35.0
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 7.2e-71 272.3 588 35.7
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.4e-69 268.1 507 45.0
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.3e-69 267.3 509 43.8
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 7.4e-68 262.3 328 49.7
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.8e-67 260.4 517 43.7
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.8e-67 260.4 517 43.7
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.0e-61 241.9 293 51.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 6.3e-59 232.6 299 49.8
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 5.0e-56 223.0 312 47.1
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.7e-54 217.2 569 32.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.2e-48 197.6 389 42.9
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.4e-47 192.2 374 44.9
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 5.7e-44 183.0 587 31.5
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 3.3e-39 167.2 253 54.2
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.6e-38 163.7 427 33.0
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.7e-38 163.3 269 43.9
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 2.0e-36 157.9 289 40.1
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.4e-36 157.1 177 50.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.8e-34 151.4 117 65.8
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 7.0e-34 149.4 390 33.6
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-32 144.8 245 47.8
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.8e-29 132.9 202 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 7.5e-28 129.4 457 31.9
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.7e-27 128.3 633 26.5
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 7.3e-23 112.8 208 41.3
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.2e-21 106.7 135 51.9
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 6.8e-21 106.3 236 37.3
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 9.2e-18 95.9 88 56.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 4.3e-15 87.0 449 26.7
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.6e-14 84.0 165 40.6
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.2e-12 79.0 86 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.5e-12 78.6 382 29.3
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 3.4e-12 77.4 366 27.0
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 2.2e-11 74.7 182 30.2
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.7e-11 73.9 79 54.4
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.4e-10 70.1 127 37.8
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 3.9e-08 63.9 76 51.3
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.1e-06 58.2 165 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.6e-06 57.4 219 29.2
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 6.2e-06 56.6 89 39.3


User provided reference genes

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