Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 8.9e-106 388.7 273 100.0
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 1.3e-43 182.2 210 81.4
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 1.1e-39 169.1 210 78.6
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 2.1e-38 164.9 168 95.2
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 1.6e-25 122.1 210 61.0
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 4.2e-23 114.0 212 60.8
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 8.0e-22 109.8 210 63.3
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 1.0e-21 109.4 212 65.1
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.8e-21 108.6 214 65.0
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.3e-21 108.2 174 66.7
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.3e-21 108.2 171 66.7
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 2.3e-21 108.2 174 55.7
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 4.0e-21 107.5 210 37.6
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.5e-20 105.5 121 50.4
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 1.3e-19 102.4 123 49.6
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 1.3e-19 102.4 186 65.6
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 4.8e-19 100.5 210 65.7
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 1.4e-18 99.0 210 65.7
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.4e-18 99.0 210 65.7
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 2.4e-18 98.2 209 65.1
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 4.1e-18 97.4 119 48.7
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 7.0e-18 96.7 184 70.1
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 7.0e-18 96.7 184 66.3
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 1.2e-17 95.9 117 49.6
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.2e-17 95.9 212 55.7
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 3.5e-17 94.4 91 56.0
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 3.5e-17 94.4 210 59.0
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 5.9e-17 93.6 155 65.8
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 5.9e-17 93.6 117 48.7
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 7.7e-17 93.2 96 53.1
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 1.0e-16 92.8 155 64.5
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 1.7e-16 92.0 210 62.9
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 2.2e-16 91.7 117 47.9
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.2e-16 91.7 120 51.7
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 3.8e-16 90.9 92 50.0
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 3.8e-16 90.9 109 52.3
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.8e-16 90.9 170 64.1
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 3.8e-16 90.9 187 71.1
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 6.5e-16 90.1 201 63.2
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 8.5e-16 89.7 180 71.1
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 8.5e-16 89.7 93 57.0
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 8.5e-16 89.7 104 46.2
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.1e-15 89.4 118 41.5
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 1.5e-15 89.0 185 63.8
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 1.5e-15 89.0 150 75.3
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.5e-15 89.0 93 53.8
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 2.5e-15 88.2 185 70.3
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 2.5e-15 88.2 185 70.3
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 4.2e-15 87.4 130 70.0
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 5.5e-15 87.0 185 69.7
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 7.2e-15 86.7 130 70.0
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 7.2e-15 86.7 130 70.0
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 1.2e-14 85.9 106 45.3
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 1.2e-14 85.9 183 68.3
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.6e-14 85.5 174 48.9
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 2.1e-14 85.1 118 45.8
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 2.7e-14 84.7 157 59.9
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 2.7e-14 84.7 185 67.0
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 3.6e-14 84.3 182 69.8
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 8.0e-14 83.2 188 67.0
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 1.4e-13 82.4 96 47.9
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 1.4e-13 82.4 157 58.6
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 1.8e-13 82.0 188 62.8
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 2.3e-13 81.6 247 53.4
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 3.0e-13 81.3 184 67.9
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 3.0e-13 81.3 91 50.5
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 4.0e-13 80.9 159 59.1
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 4.0e-13 80.9 157 59.9
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 5.2e-13 80.5 189 65.6
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 5.2e-13 80.5 194 63.4
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 1.5e-12 79.0 95 46.3
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 1.5e-12 79.0 194 63.4
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.5e-12 79.0 96 45.8
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 2.0e-12 78.6 131 87.8
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 2.6e-12 78.2 87 48.3
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 3.4e-12 77.8 99 44.4
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 3.4e-12 77.8 119 44.5
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 5.7e-12 77.0 91 48.4
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 7.5e-12 76.6 189 65.1
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.7e-11 75.5 92 46.7
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 2.2e-11 75.1 184 65.2
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 2.8e-11 74.7 184 65.2
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 2.8e-11 74.7 185 68.1
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 4.8e-11 73.9 43 76.7
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 2.4e-10 71.6 91 45.1
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 3.1e-10 71.2 96 43.8
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 3.1e-10 71.2 133 77.4
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 5.4e-10 70.5 118 39.0
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 1.2e-09 69.3 93 43.0
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 1.6e-09 68.9 93 41.9
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 1.6e-09 68.9 116 38.8
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 5.9e-09 67.0 120 57.5
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 5.9e-09 67.0 150 53.3
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.0e-08 66.2 116 40.5
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 1.3e-08 65.9 102 40.2
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 1.3e-08 65.9 95 40.0
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 2.9e-08 64.7 116 38.8
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.1e-07 62.8 99 39.4
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 3.3e-07 61.2 90 40.0
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 3.3e-07 61.2 121 36.4
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 2.8e-06 58.2 90 38.9
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 3.6e-06 57.8 89 39.3
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 6.1e-06 57.0 127 35.4
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 6.1e-06 57.0 127 35.4


User provided reference genes

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