Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.1e-89 333.2 157 100.0
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.6e-85 319.3 157 94.3
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 6.5e-58 227.6 183 62.8
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 3.6e-48 195.3 195 51.3
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 7.4e-46 187.6 203 50.7
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 9.7e-46 187.2 203 51.7
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 3.7e-45 185.3 200 48.5
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 3.7e-45 185.3 204 49.5
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 6.3e-45 184.5 203 49.3
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.1e-44 183.7 203 47.3
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 4.1e-44 181.8 199 49.2
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 4.1e-44 181.8 203 47.8
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 4.1e-44 181.8 203 47.3
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 9.1e-44 180.6 203 49.8
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 9.1e-44 180.6 203 46.8
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.2e-43 180.3 203 46.8
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.5e-43 179.9 209 48.3
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.0e-43 179.5 197 49.7
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 2.6e-43 179.1 199 49.2
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 4.5e-43 178.3 223 45.7
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.3e-42 176.8 197 48.7
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 1.3e-42 176.8 204 46.6
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.3e-42 176.8 199 48.7
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 2.2e-42 176.0 205 47.8
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 2.2e-42 176.0 203 48.3
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 2.9e-42 175.6 202 47.0
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 2.9e-42 175.6 205 47.3
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.9e-42 175.6 199 46.7
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 3.8e-42 175.3 203 46.3
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 5.0e-42 174.9 199 47.7
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.1e-41 173.7 199 47.2
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 1.1e-41 173.7 204 47.1
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.5e-41 172.6 199 46.7
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 3.2e-41 172.2 191 47.6
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 9.4e-41 170.6 203 45.3
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.6e-40 169.9 203 47.8
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 2.1e-40 169.5 203 45.3
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 2.1e-40 169.5 205 44.4
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.7e-40 169.1 203 44.3
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.6e-40 168.7 199 47.7
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 3.6e-40 168.7 203 45.8
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 3.6e-40 168.7 204 46.1
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 3.6e-40 168.7 208 45.7
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 4.7e-40 168.3 204 46.6
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 7.9e-40 167.5 197 47.7
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 1.0e-39 167.2 203 43.8
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.0e-39 167.2 203 43.8
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.8e-39 166.4 206 44.7
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.3e-39 166.0 199 45.2
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 3.0e-39 165.6 208 45.7
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.0e-39 165.6 197 47.7
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 5.2e-39 164.9 197 48.2
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 5.2e-39 164.9 196 44.9
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 8.8e-39 164.1 200 46.5
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 8.8e-39 164.1 192 47.9
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 1.1e-38 163.7 197 47.2
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 1.1e-38 163.7 203 43.3
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 1.5e-38 163.3 209 45.5
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.5e-38 163.3 198 43.9
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 2.0e-38 162.9 203 45.8
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.0e-38 162.9 203 43.3
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 2.0e-38 162.9 203 44.8
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 2.6e-38 162.5 195 46.2
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 2.6e-38 162.5 204 44.1
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.6e-38 162.5 199 45.2
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 4.4e-38 161.8 199 45.7
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 4.4e-38 161.8 199 45.2
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 5.7e-38 161.4 196 43.9
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 5.7e-38 161.4 203 44.3
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 7.4e-38 161.0 203 43.8
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.7e-37 159.8 196 44.4
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 2.8e-37 159.1 199 45.2
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 3.7e-37 158.7 206 42.2
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 4.8e-37 158.3 199 45.2
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 6.3e-37 157.9 199 44.7
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 8.2e-37 157.5 203 43.3
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.1e-36 157.1 191 46.1
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 1.4e-36 156.8 197 44.7
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.8e-36 156.4 203 42.4
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.8e-36 156.4 199 43.7
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.4e-36 156.0 200 43.5
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 3.1e-36 155.6 190 43.7
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 3.1e-36 155.6 191 47.1
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 4.1e-36 155.2 190 45.8
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 4.1e-36 155.2 194 45.9
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 4.1e-36 155.2 195 44.6
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 5.3e-36 154.8 195 43.6
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 5.3e-36 154.8 195 43.6
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 5.3e-36 154.8 203 41.4
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.0e-35 152.9 203 43.3
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 3.5e-35 152.1 204 40.7
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 1.1e-33 147.1 199 41.2
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.9e-33 146.4 199 38.7
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 1.9e-33 146.4 275 33.8
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 7.2e-33 144.4 199 38.2
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 9.4e-33 144.1 184 44.6
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 9.4e-33 144.1 199 38.7
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.6e-32 143.3 205 41.5
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.6e-32 143.3 205 41.5
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 2.1e-32 142.9 184 44.6
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 2.1e-32 142.9 184 45.1
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 2.1e-32 142.9 184 44.6
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 2.1e-32 142.9 215 38.6
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.4e-31 140.2 190 42.6
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 2.3e-31 139.4 199 41.7
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 5.2e-31 138.3 204 41.2
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 5.7e-30 134.8 210 41.9
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 7.5e-30 134.4 196 38.3
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.7e-29 133.3 183 42.6
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 2.2e-29 132.9 162 43.8
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 3.7e-29 132.1 204 39.7
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.1e-28 130.6 199 41.2
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 5.3e-28 128.3 183 42.1
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 2.0e-27 126.3 199 39.2
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 3.5e-27 125.6 276 32.2
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.9e-27 124.8 140 45.0
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 7.7e-27 124.4 190 38.9
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 6.5e-26 121.3 198 36.4
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 6.5e-26 121.3 115 49.6
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 8.5e-26 120.9 200 34.5
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.5e-25 119.4 194 37.1
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 4.2e-25 118.6 132 43.9
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 3.6e-24 115.5 152 42.1
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 3.6e-24 115.5 152 42.1
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.0e-23 114.0 153 41.8
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.0e-23 114.0 208 35.1
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 6.8e-23 111.3 63 74.6
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 8.8e-23 110.9 212 35.8
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 1.2e-22 110.5 200 33.0
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 5.7e-22 108.2 178 36.0
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 9.8e-22 107.5 143 42.7
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 1.3e-21 107.1 190 36.3
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.4e-20 103.6 174 35.6
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 1.4e-20 103.6 186 35.5
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.8e-20 103.2 146 41.1
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 2.4e-20 102.8 171 38.0
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 7.0e-20 101.3 193 31.6
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 9.1e-20 100.9 167 35.3
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.0e-19 99.8 148 41.2
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 5.9e-19 98.2 165 39.4
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 5.9e-19 98.2 103 42.7
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 5.9e-19 98.2 136 43.4
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 2.3e-18 96.3 186 33.9
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 2.3e-18 96.3 187 33.7
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.6e-16 90.1 140 39.3
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 4.7e-16 88.6 64 59.4
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.0e-15 87.4 195 32.8
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 1.2e-14 84.0 149 38.9
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.2e-14 84.0 45 75.6
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 1.5e-14 83.6 145 36.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 9.8e-14 80.9 189 30.2
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.4e-12 77.0 195 30.3
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.6e-11 73.6 155 34.2
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.3e-10 70.5 144 30.6
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 5.0e-10 68.6 124 37.1


User provided reference genes

Program Settings