Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 5.7e-205 717.6 436 100.0
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 2.4e-179 632.5 428 90.2
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 6.2e-151 538.1 427 71.2
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 2.6e-133 479.6 431 63.3
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 9.7e-104 381.3 428 48.1
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.3e-100 370.9 424 50.0
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 1.7e-100 370.5 428 48.8
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.9e-99 367.1 429 47.8
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.8e-97 360.5 437 48.3
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 4.0e-97 359.4 428 47.4
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 6.8e-97 358.6 424 49.3
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 3.4e-96 356.3 427 47.5
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 2.2e-95 353.6 428 48.4
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 4.8e-95 352.4 423 47.8
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.2e-93 347.8 429 46.9
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.2e-92 343.6 327 58.1
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 2.9e-92 343.2 391 48.1
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 6.5e-92 342.0 429 45.7
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 5.5e-91 339.0 428 45.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.3e-87 327.8 424 45.0
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.2e-87 327.0 428 52.6
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 3.7e-87 326.2 424 44.1
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.2e-85 321.2 424 44.8
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 5.9e-85 318.9 433 42.3
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 7.7e-85 318.5 375 49.3
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.3e-84 317.8 425 44.0
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 2.9e-84 316.6 423 47.8
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.9e-83 313.9 428 42.1
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 3.3e-83 313.2 424 45.0
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 5.5e-83 312.4 428 43.7
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 5.5e-83 312.4 529 39.5
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 5.5e-83 312.4 424 43.2
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 9.5e-83 311.6 424 51.9
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 9.5e-83 311.6 346 50.9
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 2.8e-82 310.1 371 48.0
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 2.8e-82 310.1 427 43.8
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 1.0e-81 308.1 424 51.7
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.8e-81 307.4 428 41.4
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 3.0e-81 306.6 430 43.5
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 4.0e-81 306.2 376 54.5
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 6.8e-81 305.4 423 48.0
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 8.9e-81 305.1 429 42.7
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.5e-80 304.3 424 42.5
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 2.0e-80 303.9 424 42.2
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 2.6e-80 303.5 428 42.5
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 4.4e-80 302.8 430 42.1
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 7.5e-80 302.0 423 42.6
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 1.7e-79 300.8 428 49.1
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 4.9e-79 299.3 428 41.1
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 8.3e-79 298.5 450 40.4
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 1.1e-78 298.1 422 41.9
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.4e-78 297.7 430 40.9
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.4e-78 297.0 376 53.7
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.2e-78 296.6 423 42.8
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.6e-77 294.3 424 41.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 2.7e-77 293.5 366 51.6
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 3.5e-77 293.1 423 47.8
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 7.8e-77 292.0 424 40.6
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 7.8e-77 292.0 424 42.2
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.8e-77 292.0 328 50.9
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 1.3e-76 291.2 430 40.7
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 2.3e-76 290.4 426 42.3
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.1e-75 288.1 439 41.2
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.1e-75 288.1 423 40.9
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.1e-75 288.1 423 40.7
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.5e-75 287.0 429 41.7
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.1e-74 283.9 367 44.1
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.4e-73 281.2 433 41.3
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 3.1e-73 280.0 464 43.3
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 6.8e-73 278.9 393 41.7
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 5.8e-72 275.8 442 40.5
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 5.8e-72 275.8 442 40.5
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 7.5e-72 275.4 423 39.7
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 7.5e-72 275.4 434 41.2
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 9.8e-72 275.0 428 40.7
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 9.8e-72 275.0 442 40.7
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.1e-70 271.6 431 39.7
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.4e-70 271.2 591 33.8
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 2.0e-69 267.3 423 39.7
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.5e-69 266.5 415 40.7
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 6.0e-69 265.8 455 38.5
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.0e-68 265.0 488 36.9
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 3.0e-68 263.5 433 38.3
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.1e-67 261.5 427 38.4
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 9.5e-67 258.5 431 38.5
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.8e-65 254.2 430 39.5
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.1e-65 253.4 449 37.6
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 5.2e-65 252.7 429 38.7
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 1.2e-64 251.5 302 47.4
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 1.2e-64 251.5 376 42.0
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 5.8e-64 249.2 412 38.6
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 9.8e-64 248.4 350 44.6
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.7e-63 247.7 450 37.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 6.4e-63 245.7 433 37.9
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 1.2e-61 241.5 246 49.2
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 2.3e-60 237.3 418 35.9
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.6e-60 235.7 418 35.9
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 6.6e-60 235.7 257 48.2
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 3.3e-59 233.4 429 35.4
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 5.6e-59 232.6 419 35.3
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.8e-58 230.3 415 36.9
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 4.7e-58 229.6 341 39.0
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.4e-57 228.0 424 36.1
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.3e-57 227.3 392 38.0
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 3.1e-57 226.9 390 38.5
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 8.9e-57 225.3 431 36.9
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.5e-56 224.6 424 36.6
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 2.9e-55 220.3 483 33.3
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 3.7e-55 219.9 449 35.0
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 6.0e-53 212.6 341 47.8
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 5.1e-52 209.5 260 44.2
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 2.1e-50 204.1 406 36.5
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.4e-46 190.7 437 34.1
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.2e-45 188.3 218 46.3
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.6e-45 188.0 253 40.7
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 3.5e-45 186.8 204 48.0
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 9.0e-41 172.2 413 31.2
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.4e-40 169.9 410 32.0
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 9.3e-38 162.2 225 38.7
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 2.1e-37 161.0 205 43.9
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 2.7e-37 160.6 338 34.0
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.7e-36 157.9 413 29.1
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 5.6e-35 152.9 298 35.6
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 9.6e-35 152.1 591 25.9
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.3e-34 151.8 393 30.8
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.1e-29 134.4 129 62.8
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.3e-26 125.2 161 42.9
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.4e-25 121.7 373 28.4
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.4e-25 121.7 207 40.1
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 4.0e-25 120.2 133 56.4
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 9.0e-25 119.0 201 35.3
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 2.6e-24 117.5 428 27.1
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 6.5e-23 112.8 251 29.9
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.9e-22 111.3 200 40.0
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.7e-20 102.8 98 50.0
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.5e-19 100.9 339 26.0
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.5e-19 100.9 99 49.5
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.3e-19 100.1 76 57.9
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 3.1e-17 94.0 407 27.8
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 9.0e-17 92.4 96 46.9
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 5.9e-16 89.7 136 42.6
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 2.9e-15 87.4 109 48.6
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 9.3e-14 82.4 203 30.5
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 3.5e-13 80.5 187 33.2
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 3.3e-11 73.9 83 42.2
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 3.3e-11 73.9 174 28.7
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 7.4e-11 72.8 138 37.7
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 2.2e-10 71.2 81 46.9
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 4.1e-09 67.0 74 48.6
PRCOL_00002550 Prasinoderma coloniale HOM05D004546 ORTHO05D005419 6.9e-09 66.2 185 27.0
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 8.5e-07 59.3 91 41.8
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 2.5e-06 57.8 143 30.8


User provided reference genes

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