Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 4.5e-141 504.6 259 100.0
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 2.9e-111 405.6 404 59.9
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 8.3e-103 377.5 363 59.5
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 6.2e-98 361.3 362 56.4
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 6.9e-89 331.3 363 52.9
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.2e-88 330.5 358 54.2
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 2.0e-88 329.7 358 54.2
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 7.6e-88 327.8 360 52.5
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.1e-86 323.9 361 51.8
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 5.4e-86 321.6 350 52.6
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 9.3e-86 320.9 361 50.7
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 9.3e-86 320.9 361 51.5
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 1.6e-85 320.1 369 50.7
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 1.7e-84 316.6 363 50.4
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 1.7e-84 316.6 361 51.5
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 2.3e-84 316.2 364 52.5
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 3.9e-84 315.5 361 50.1
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.9e-84 315.5 361 50.1
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.9e-84 315.5 361 50.1
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.5e-83 313.5 360 50.6
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.9e-83 313.2 376 48.7
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 7.3e-83 311.2 361 49.6
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 1.6e-82 310.1 365 49.6
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 2.1e-82 309.7 357 50.1
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 2.1e-82 309.7 361 49.0
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 2.8e-82 309.3 355 50.7
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 3.6e-82 308.9 361 50.7
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 3.6e-82 308.9 361 49.9
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 3.6e-82 308.9 360 49.2
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 4.8e-82 308.5 359 49.9
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 4.8e-82 308.5 361 49.9
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 1.4e-81 307.0 368 49.7
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 3.1e-81 305.8 359 50.7
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 4.0e-81 305.4 360 49.4
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 4.0e-81 305.4 360 49.4
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 4.0e-81 305.4 368 48.4
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 4.0e-81 305.4 344 51.5
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 5.3e-81 305.1 361 49.9
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 1.5e-80 303.5 362 48.3
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 5.8e-80 301.6 358 49.2
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 9.9e-80 300.8 375 49.1
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 9.9e-80 300.8 362 50.6
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 1.7e-79 300.1 349 50.1
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 3.8e-79 298.9 367 49.0
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 4.9e-79 298.5 359 48.7
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 6.4e-79 298.1 361 48.8
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 8.4e-79 297.7 383 48.3
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 1.1e-78 297.4 362 48.9
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 1.1e-78 297.4 364 49.2
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.4e-78 296.2 404 44.6
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 3.2e-78 295.8 358 50.0
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 7.1e-78 294.7 362 47.2
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 7.1e-78 294.7 361 49.3
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 1.6e-77 293.5 415 43.6
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 2.7e-77 292.7 361 49.0
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 4.6e-77 292.0 362 48.9
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 6.0e-77 291.6 363 47.4
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 1.0e-76 290.8 386 44.8
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 1.8e-76 290.0 361 48.8
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 1.8e-76 290.0 362 47.8
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.3e-76 289.7 368 47.6
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 6.7e-76 288.1 363 47.4
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 6.7e-76 288.1 361 47.6
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 2.5e-75 286.2 311 52.1
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 2.8e-74 282.7 387 44.4
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 4.8e-74 282.0 387 44.4
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 6.2e-74 281.6 441 41.0
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 6.2e-74 281.6 362 48.1
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 8.1e-74 281.2 356 48.6
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 8.1e-74 281.2 357 48.7
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 1.1e-73 280.8 392 45.4
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 5.3e-73 278.5 403 45.2
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 6.9e-73 278.1 358 46.4
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 1.2e-72 277.3 361 47.4
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 2.0e-72 276.6 361 47.1
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 2.9e-71 272.7 299 51.8
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 4.9e-71 271.9 359 47.1
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 4.9e-71 271.9 359 47.1
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 1.1e-70 270.8 372 44.9
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 4.2e-70 268.9 365 46.3
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 5.5e-70 268.5 335 49.3
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 9.3e-70 267.7 306 52.9
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 2.7e-69 266.2 359 46.0
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.9e-68 262.3 379 44.6
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 6.7e-68 261.5 362 45.3
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 1.6e-66 256.9 362 45.9
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 1.5e-64 250.4 358 44.4
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 1.5e-64 250.4 358 41.1
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 2.0e-64 250.0 362 43.9
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 3.4e-64 249.2 358 42.2
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 4.9e-63 245.4 372 40.6
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 2.5e-62 243.0 403 39.7
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 2.1e-61 240.0 305 49.8
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 1.0e-60 237.7 314 46.8
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.1e-59 234.2 210 62.4
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 7.4e-59 231.5 268 51.1
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.4e-57 227.3 301 47.8
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 7.7e-56 221.5 212 58.0
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 1.2e-53 214.2 366 39.1
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 3.6e-53 212.6 281 47.0
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 1.0e-52 211.1 236 53.0
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 3.0e-52 209.5 212 56.1
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 9.7e-51 204.5 210 55.7
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 6.9e-49 198.4 236 49.6
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 1.2e-48 197.6 211 54.5
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 9.4e-46 188.0 236 47.5
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 3.6e-45 186.0 362 36.5
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 1.1e-43 181.0 214 49.5
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 5.7e-43 178.7 364 35.4
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 3.1e-41 172.9 367 34.9
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 1.7e-39 167.2 160 59.4
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 6.5e-39 165.2 198 49.0
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 2.6e-35 153.3 315 36.5
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 9.7e-35 151.4 310 35.5
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 1.8e-33 147.1 354 33.9
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 5.5e-30 135.6 106 65.1
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.6e-29 132.9 96 68.8
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 4.7e-29 132.5 93 68.8
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 1.2e-27 127.9 166 47.6
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 7.0e-25 118.6 181 40.3
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 1.3e-23 114.4 182 43.4
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.3e-23 114.4 95 57.9
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 1.3e-23 114.4 100 59.0
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 3.8e-23 112.8 105 60.0
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 5.2e-20 102.4 76 69.7
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 2.0e-19 100.5 72 76.4
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 2.8e-18 96.7 125 46.4
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 2.0e-16 90.5 198 31.8
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.3e-15 87.8 99 47.5
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 3.8e-15 86.3 171 32.2
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 5.0e-15 85.9 297 30.6
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 4.0e-12 76.3 65 60.0
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 2.0e-08 63.9 47 63.8


User provided reference genes

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