Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014192 Chenopodium quinoa HOM05D003075 ORTHO05D003430 8.4e-79 297.0 151 100.0
AUR62013643 Chenopodium quinoa HOM05D003075 ORTHO05D003430 7.4e-27 124.4 65 90.8
AUR62018381 Chenopodium quinoa HOM05D003075 ORTHO05D003430 2.2e-26 122.9 65 89.2
AUR62004205 Chenopodium quinoa HOM05D003075 ORTHO05D003430 2.8e-26 122.5 65 89.2
EL10Ac1g00881 Beta vulgaris HOM05D003075 ORTHO05D003430 1.3e-23 113.6 65 80.0
Hund17026 Selenicereus undatus HOM05D003075 ORTHO05D003430 3.2e-22 109.0 67 73.1
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 6.1e-21 104.8 67 73.1
Peaxi162Scf00013g03226 Petunia axillaris HOM05D003075 ORTHO05D003430 6.1e-21 104.8 67 71.6
Cpa.g.sc11.49 Carica papaya HOM05D003075 ORTHO05D003430 7.9e-21 104.4 67 73.1
Haze_16798 Corylus avellana HOM05D003075 ORTHO05D003430 7.9e-21 104.4 66 75.8
Manes.01G266500 Manihot esculenta HOM05D003075 ORTHO05D003430 7.9e-21 104.4 67 73.1
Glyma.17G199600 Glycine max HOM05D003075 ORTHO05D003430 1.0e-20 104.0 67 74.6
Oeu064471.1 Olea europaea HOM05D003075 ORTHO05D003430 1.0e-20 104.0 64 75.0
Atru.chr5.294 Acer truncatum HOM05D003075 ORTHO05D003430 2.3e-20 102.8 64 76.6
arahy.Tifrunner.gnm1.ann1.G5NZ7A Arachis hypogaea HOM05D003075 ORTHO05D003430 3.0e-20 102.4 64 76.6
GSVIVG01027678001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.0e-20 102.4 67 71.6
GSVIVG01027679001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.0e-20 102.4 67 70.1
Nn1g01143 Nelumbo nucifera HOM05D003075 ORTHO05D003430 3.9e-20 102.1 67 68.7
Cfa001744 Carpinus fangiana HOM05D003075 ORTHO05D003430 5.2e-20 101.7 64 73.4
Nitab4.5_0004552g0030 Nicotiana tabacum HOM05D003075 ORTHO05D003430 5.2e-20 101.7 67 67.2
Cc02_g24000 Coffea canephora HOM05D003075 ORTHO05D003430 6.7e-20 101.3 64 70.3
Glyma.17G254400 Glycine max HOM05D003075 ORTHO05D003430 6.7e-20 101.3 67 71.6
Gohir.A08G135300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 6.7e-20 101.3 64 73.4
Gohir.D08G156200 Gossypium hirsutum HOM05D003075 ORTHO05D003430 6.7e-20 101.3 64 73.4
Gorai.004G162500 Gossypium raimondii HOM05D003075 ORTHO05D003430 6.7e-20 101.3 64 73.4
Nitab4.5_0000457g0150 Nicotiana tabacum HOM05D003075 ORTHO05D003430 6.7e-20 101.3 67 65.7
Solyc01g091210.3 Solanum lycopersicum HOM05D003075 ORTHO05D003430 6.7e-20 101.3 67 65.7
Sopen01g036960 Solanum pennellii HOM05D003075 ORTHO05D003430 6.7e-20 101.3 67 65.7
PGSC0003DMG402025960 Solanum tuberosum HOM05D003075 ORTHO05D003430 6.7e-20 101.3 67 65.7
arahy.Tifrunner.gnm1.ann1.7U8F1S Arachis hypogaea HOM05D003075 ORTHO05D003430 8.8e-20 100.9 64 76.6
arahy.Tifrunner.gnm1.ann1.TA4JIU Arachis hypogaea HOM05D003075 ORTHO05D003430 8.8e-20 100.9 64 76.6
Lsat_1_v5_gn_8_86100 Lactuca sativa HOM05D003075 ORTHO05D003430 8.8e-20 100.9 70 64.3
Eucgr.D02463 Eucalyptus grandis HOM05D003075 ORTHO05D003430 1.1e-19 100.5 67 68.7
Lsat_1_v5_gn_7_9801 Lactuca sativa HOM05D003075 ORTHO05D003430 1.1e-19 100.5 67 67.2
CiPaw.09G176300 Carya illinoinensis HOM05D003075 ORTHO05D003430 1.5e-19 100.1 64 73.4
MD00G1100000 Malus domestica HOM05D003075 ORTHO05D003430 1.5e-19 100.1 67 71.6
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 2.0e-19 99.8 64 73.4
Aqoxy5G02670 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 2.0e-19 99.8 67 70.1
CAN.G388.29 Capsicum annuum HOM05D003075 ORTHO05D003430 2.0e-19 99.8 67 64.2
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 2.0e-19 99.8 67 65.7
arahy.Tifrunner.gnm1.ann1.1FZS4Y Arachis hypogaea HOM05D003075 ORTHO05D003430 2.6e-19 99.4 64 75.0
MELO3C006196.2 Cucumis melo HOM05D003075 ORTHO05D003430 2.6e-19 99.4 64 71.9
Migut.N01626 Erythranthe guttata HOM05D003075 ORTHO05D003430 2.6e-19 99.4 64 70.3
CsaV3_3G009750 Cucumis sativus L. HOM05D003075 ORTHO05D003430 3.3e-19 99.0 64 71.9
FvH4_7g11590 Fragaria vesca HOM05D003075 ORTHO05D003430 3.3e-19 99.0 67 68.7
FAN06G2161 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-19 99.0 67 68.7
FAN06G4578 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-19 99.0 67 68.7
FAN10G0718 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-19 99.0 67 68.7
FAN10G3608 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-19 99.0 67 68.7
QL08p052672 Quercus lobata HOM05D003075 ORTHO05D003430 3.3e-19 99.0 64 73.4
Sc23g0003640 Simmondsia chinensis HOM05D003075 ORTHO05D003430 3.3e-19 99.0 67 67.2
THA.LOC104819580 Tarenaya hassleriana HOM05D003075 ORTHO05D003430 3.3e-19 99.0 64 70.3
VMungo0331G0754 Vigna mungo HOM05D003075 ORTHO05D003430 3.3e-19 99.0 64 71.9
Aqoxy7G00659 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 4.4e-19 98.6 64 73.4
Carub.0004s2796 Capsella rubella HOM05D003075 ORTHO05D003430 4.4e-19 98.6 67 68.7
FAN03G3200 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.4e-19 98.6 67 68.7
HanXRQChr04g0122761 Helianthus annuus HOM05D003075 ORTHO05D003430 4.4e-19 98.6 67 65.7
Potri.013G094500 Populus trichocarpa HOM05D003075 ORTHO05D003430 4.4e-19 98.6 67 68.7
PGR042G3567 Punica granatum HOM05D003075 ORTHO05D003430 4.4e-19 98.6 67 67.2
RcHm_v2.0_Chr1g0350011 Rosa chinensis HOM05D003075 ORTHO05D003430 4.4e-19 98.6 67 68.7
MSTRG.4898 Avicennia marina HOM05D003075 ORTHO05D003430 5.7e-19 98.2 64 71.9
Lj3g0026412 Lotus japonicus HOM05D003075 ORTHO05D003430 5.7e-19 98.2 64 73.4
PSO478G3315 Papaver somniferum HOM05D003075 ORTHO05D003430 5.7e-19 98.2 67 70.1
SalBow5G2038 Salvia bowleyana HOM05D003075 ORTHO05D003430 5.7e-19 98.2 67 65.7
CSS0007073 Camellia sinensis var. sinensis HOM05D003075 ORTHO05D003430 7.4e-19 97.8 64 70.3
ECA236G1357 Erigeron canadensis HOM05D003075 ORTHO05D003430 7.4e-19 97.8 67 64.2
Gorai.009G455600 Gossypium raimondii HOM05D003075 ORTHO05D003430 7.4e-19 97.8 77 62.3
PSO135G0225 Papaver somniferum HOM05D003075 ORTHO05D003430 7.4e-19 97.8 67 68.7
Phvul.010G084500 Phaseolus vulgaris HOM05D003075 ORTHO05D003430 7.4e-19 97.8 64 71.9
Psat7g231560 Pisum sativum HOM05D003075 ORTHO05D003430 7.4e-19 97.8 63 73.0
Prupe.2G143900 Prunus persica HOM05D003075 ORTHO05D003430 7.4e-19 97.8 67 68.7
TPR.G9841 Trifolium pratense HOM05D003075 ORTHO05D003430 7.4e-19 97.8 63 74.6
TWI23G0023 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 7.4e-19 97.8 64 68.8
TAR375G0194 Trochodendron aralioides HOM05D003075 ORTHO05D003430 7.4e-19 97.8 64 70.3
Zm00001eb377990 Zea mays HOM05D003075 ORTHO05D003430 7.4e-19 97.8 64 68.8
arahy.Tifrunner.gnm1.ann1.2E18SB Arachis hypogaea HOM05D003075 ORTHO05D003430 9.7e-19 97.4 64 71.9
Duzib138G0067 Durio zibethinus HOM05D003075 ORTHO05D003430 9.7e-19 97.4 64 70.3
Duzib138G1594 Durio zibethinus HOM05D003075 ORTHO05D003430 9.7e-19 97.4 64 70.3
Gohir.D05G389001 Gossypium hirsutum HOM05D003075 ORTHO05D003430 9.7e-19 97.4 77 62.3
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.3e-18 97.1 67 68.7
Oeu003479.1 Olea europaea HOM05D003075 ORTHO05D003430 1.3e-18 97.1 64 70.3
SGA_v2.0_scaffold43G16486 Striga asiatica HOM05D003075 ORTHO05D003430 1.3e-18 97.1 67 65.7
Thecc.01G378100 Theobroma cacao HOM05D003075 ORTHO05D003430 1.3e-18 97.1 64 70.3
CANSAT35G1223 Cannabis sativa HOM05D003075 ORTHO05D003430 1.7e-18 96.7 64 68.8
Lj9A568T64 Lonicera japonica HOM05D003075 ORTHO05D003430 1.7e-18 96.7 64 70.3
PSO384G4045 Papaver somniferum HOM05D003075 ORTHO05D003430 1.7e-18 96.7 67 67.2
Sabra02G0114300 Salix brachista HOM05D003075 ORTHO05D003430 1.7e-18 96.7 67 65.7
Gohir.D01G222050 Gossypium hirsutum HOM05D003075 ORTHO05D003430 2.2e-18 96.3 64 70.3
Gorai.002G268800 Gossypium raimondii HOM05D003075 ORTHO05D003430 2.2e-18 96.3 64 70.3
Zm00001eb244410 Zea mays HOM05D003075 ORTHO05D003430 2.2e-18 96.3 64 68.8
Gorai.007G000400 Gossypium raimondii HOM05D003075 ORTHO05D003430 2.8e-18 95.9 77 61.0
Gorai.008G298600 Gossypium raimondii HOM05D003075 ORTHO05D003430 2.8e-18 95.9 77 61.0
Medtr4g023500 Medicago truncatula HOM05D003075 ORTHO05D003430 2.8e-18 95.9 63 73.0
BcaC02g12230 Brassica carinata HOM05D003075 ORTHO05D003430 3.7e-18 95.5 64 68.8
C04p06190 Brassica napus HOM05D003075 ORTHO05D003430 3.7e-18 95.5 64 68.8
BolC4t22244H Brassica oleracea HOM05D003075 ORTHO05D003430 3.7e-18 95.5 64 68.8
CARHR140540 Cardamine hirsuta HOM05D003075 ORTHO05D003430 3.7e-18 95.5 64 71.9
Lalb_Chr12g0208211 Lupinus albus HOM05D003075 ORTHO05D003430 3.7e-18 95.5 64 71.9
MD07G1120400 Malus domestica HOM05D003075 ORTHO05D003430 3.7e-18 95.5 67 67.2
Os06g0134050 Oryza sativa ssp. japonica HOM05D003075 ORTHO05D003430 3.7e-18 95.5 64 67.2
Potri.002G117000 Populus trichocarpa HOM05D003075 ORTHO05D003430 3.7e-18 95.5 67 67.2
SalBow7G2967 Salvia bowleyana HOM05D003075 ORTHO05D003430 3.7e-18 95.5 64 67.2
Ca_19890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 4.8e-18 95.1 63 73.0
Aa31LG1G26840 Aethionema arabicum HOM05D003075 ORTHO05D003430 6.3e-18 94.7 64 70.3
BolC4t22246H Brassica oleracea HOM05D003075 ORTHO05D003430 6.3e-18 94.7 68 67.6
MBI12_g31643_MAGBIO Magnolia biondii HOM05D003075 ORTHO05D003430 6.3e-18 94.7 67 64.2
Ca_17564_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 8.2e-18 94.4 63 71.4
Thhalv10001570m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 1.1e-17 94.0 67 67.2
Aqoxy5G02557 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 1.4e-17 93.6 67 67.2
Ciclev10009039m.g Citrus clementina HOM05D003075 ORTHO05D003430 1.4e-17 93.6 64 68.8
AT2G45330 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 1.8e-17 93.2 64 68.8
Thhalv10019720m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 1.8e-17 93.2 71 63.4
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.8e-17 93.2 67 62.7
TWI14G0663 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 1.8e-17 93.2 64 67.2
A05p05320 Brassica napus HOM05D003566 ORTHO05D003430 2.4e-17 92.8 64 68.8
BraA05t19501Z Brassica rapa HOM05D003075 ORTHO05D003430 2.4e-17 92.8 64 68.8
Sp4g27360 Schrenkiella parvula HOM05D003075 ORTHO05D003430 2.4e-17 92.8 64 67.2
AL4G44430 Arabidopsis lyrata HOM05D003075 ORTHO05D003430 4.1e-17 92.0 64 67.2
BcaB02g08941 Brassica carinata HOM05D003075 ORTHO05D003430 5.3e-17 91.7 65 69.2
BcaC02g12227 Brassica carinata HOM05D003075 ORTHO05D003430 5.3e-17 91.7 64 68.8
CDE09G0478 Ceratophyllum demersum HOM05D003075 ORTHO05D003430 5.3e-17 91.7 67 62.7
vmacro13410 Vaccinium macrocarpon HOM05D003075 ORTHO05D003430 5.3e-17 91.7 65 70.8
AT5G23600 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 9.1e-17 90.9 64 67.2
DCAR_008556 Daucus carota HOM05D003075 ORTHO05D003430 9.1e-17 90.9 67 62.7
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 9.1e-17 90.9 67 64.2
A05p05260 Brassica napus HOM05D003075 ORTHO05D003430 1.2e-16 90.5 64 65.6
BraA05t19496Z Brassica rapa HOM05D003075 ORTHO05D003430 1.2e-16 90.5 64 65.6
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.2e-16 90.5 60 66.7
Lj7C530G5 Lonicera japonica HOM05D003075 ORTHO05D003430 1.2e-16 90.5 70 64.3
Medtr4g084670 Medicago truncatula HOM05D003075 ORTHO05D003430 2.6e-16 89.4 63 69.8
SMO364G0829 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 2.6e-16 89.4 68 58.8
ATR0733G147 Amborella trichopoda HOM05D003075 ORTHO05D003430 3.5e-16 89.0 65 61.5
RcHm_v2.0_Chr7g0199321 Rosa chinensis HOM05D003075 ORTHO05D003430 1.0e-15 87.4 69 59.4
Nitab4.5_0005272g0010 Nicotiana tabacum HOM05D003075 ORTHO05D003430 1.3e-15 87.0 59 64.4
HPP92_008230 Vanilla planifolia HOM05D003075 ORTHO05D003430 1.5e-14 83.6 64 60.9
SGA_v2.0_scaffold11G05572 Striga asiatica HOM05D003075 ORTHO05D003430 1.9e-14 83.2 61 63.9
Rhsim07G0028400 Rhododendron simsii HOM05D003075 ORTHO05D003430 2.5e-14 82.8 98 49.0
SEGI_11423 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 2.5e-14 82.8 67 53.7
Hma1.2p1_0446F.1_g154650 Hydrangea macrophylla HOM05D003075 ORTHO05D003430 5.5e-14 81.6 76 52.6
Mapoly0104s0031 Marchantia polymorpha HOM05D003075 ORTHO05D003430 7.2e-14 81.3 65 55.4
Pp3c9_2940 Physcomitrium patens HOM05D003075 ORTHO05D003430 2.1e-13 79.7 67 52.2
Sp4g05260 Schrenkiella parvula HOM05D003075 ORTHO05D003430 2.7e-13 79.3 80 52.5
arahy.Tifrunner.gnm1.ann1.LQNG80 Arachis hypogaea HOM05D003075 ORTHO05D003430 8.0e-13 77.8 64 64.1
SEGI_27190 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 8.0e-13 77.8 67 50.7
SEGI_02177 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 1.4e-12 77.0 86 45.3
FAN01G2913 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.8e-12 76.6 63 60.3
SMO364G0475 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 1.8e-12 76.6 67 50.7
AUR62043207 Chenopodium quinoa HOM05D003075 ORTHO05D003430 2.3e-12 76.3 107 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2903 Anthoceros agrestis HOM05D003075 ORTHO05D003430 6.7e-12 74.7 67 50.7
SMO347G0280 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 8.8e-12 74.3 65 52.3
SEGI_08717 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 8.8e-12 74.3 67 49.3
SEGI_22200 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 8.8e-12 74.3 67 47.8
SEGI_27896 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 8.8e-12 74.3 67 49.3
FAN03G0642 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.4e-11 72.0 47 70.2
FAN03G2732 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.4e-11 72.0 47 70.2
CBR_g28889 Chara braunii HOM05D003075 ORTHO05D003430 1.7e-10 70.1 62 50.0
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 3.7e-10 68.9 47 68.1
AL1G18190 Arabidopsis lyrata HOM05D003075 ORTHO05D003430 6.3e-10 68.2 54 55.6
SMO199G0023 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 4.1e-09 65.5 68 45.6
Ah.05g174300 Amaranthus hybridus HOM05D003075 ORTHO05D003430 9.1e-09 64.3 192 28.6
Dinv43697 Davidia involucrata HOM05D003075 ORTHO05D003430 1.2e-08 63.9 77 39.0
Sed0011315 Sechium edule HOM05D003075 ORTHO05D003430 2.0e-08 63.2 77 39.0
Nn4g26370 Nelumbo nucifera HOM05D003075 ORTHO05D003430 5.9e-08 61.6 77 36.4
SMO201G0115 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 1.0e-07 60.8 65 44.6
Ca_19902_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 4.2e-06 55.5 35 71.4
SMO147G0017 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 4.2e-06 55.5 77 41.6
Ca_29890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 7.2e-06 54.7 35 68.6


User provided reference genes

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