Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 3.1e-150 535.0 258 100.0
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.2e-143 512.3 251 98.0
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.7e-132 476.1 251 88.8
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 9.8e-128 460.3 250 87.2
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 3.8e-124 448.4 250 84.4
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 4.4e-120 434.9 250 82.0
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 7.7e-117 424.1 250 78.0
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 6.6e-116 421.0 251 80.1
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.5e-115 419.9 251 77.7
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.5e-115 419.9 251 79.3
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 2.5e-115 419.1 251 78.5
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 2.5e-115 419.1 251 78.9
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 3.3e-115 418.7 251 78.5
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 9.5e-115 417.2 251 77.7
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 9.5e-115 417.2 251 79.3
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.2e-114 416.8 250 78.0
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 2.1e-114 416.0 267 74.9
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 3.6e-114 415.2 251 78.1
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 3.6e-114 415.2 251 78.1
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 1.0e-113 413.7 251 78.1
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.8e-113 412.9 251 78.5
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.3e-113 412.5 251 77.7
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 2.3e-113 412.5 251 75.7
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 3.0e-113 412.1 251 76.1
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 5.2e-113 411.4 251 77.3
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 6.8e-113 411.0 251 76.5
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 6.8e-113 411.0 251 77.7
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 6.8e-113 411.0 251 76.9
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 6.8e-113 411.0 251 76.5
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-112 410.2 251 77.7
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.5e-112 409.8 251 76.5
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.5e-112 409.8 250 77.2
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.5e-112 409.8 251 77.7
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.5e-112 409.8 251 77.7
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.5e-112 409.8 251 77.7
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 2.0e-112 409.5 250 74.4
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 2.0e-112 409.5 250 77.2
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 2.6e-112 409.1 250 74.8
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 3.4e-112 408.7 250 76.0
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 4.4e-112 408.3 250 76.0
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 4.4e-112 408.3 250 76.8
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 5.7e-112 407.9 251 76.9
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 7.5e-112 407.5 251 75.7
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 9.8e-112 407.1 250 76.8
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 1.3e-111 406.8 250 74.8
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 1.7e-111 406.4 250 76.4
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.7e-111 406.4 251 76.5
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.7e-111 406.4 251 76.1
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.2e-111 406.0 251 76.5
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 2.9e-111 405.6 250 76.4
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 2.9e-111 405.6 254 76.0
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 2.9e-111 405.6 251 75.7
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 3.7e-111 405.2 251 76.1
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 3.7e-111 405.2 251 74.9
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 4.9e-111 404.8 251 76.9
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 6.3e-111 404.4 250 76.0
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 6.3e-111 404.4 251 76.9
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.1e-110 403.7 250 75.2
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.4e-110 403.3 258 73.6
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.4e-110 403.3 250 74.8
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.4e-110 403.3 250 76.0
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 2.4e-110 402.5 250 75.2
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 4.1e-110 401.7 251 76.1
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 5.4e-110 401.4 250 76.4
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 5.4e-110 401.4 251 75.7
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 5.4e-110 401.4 251 75.3
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 7.0e-110 401.0 250 74.4
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 9.2e-110 400.6 250 74.8
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 9.2e-110 400.6 250 74.8
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.2e-109 400.2 250 74.4
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 1.2e-109 400.2 251 74.9
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.6e-109 399.8 247 73.7
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 2.0e-109 399.4 250 75.2
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 3.5e-109 398.7 250 74.0
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 3.5e-109 398.7 250 74.0
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 5.9e-109 397.9 251 75.3
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 7.8e-109 397.5 250 73.2
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 1.0e-108 397.1 251 73.3
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 5.0e-108 394.8 251 75.7
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 1.5e-107 393.3 250 73.6
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 4.3e-107 391.7 279 67.7
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 4.3e-107 391.7 250 74.0
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 4.7e-106 388.3 250 73.2
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 1.0e-105 387.1 259 72.2
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.0e-105 387.1 235 77.9
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 8.9e-105 384.0 251 73.7
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 8.9e-105 384.0 251 73.7
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 1.5e-104 383.3 247 71.7
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.5e-104 383.3 247 71.3
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.5e-104 383.3 251 73.3
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.5e-104 383.3 251 73.3
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 2.0e-104 382.9 250 72.0
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 4.9e-103 378.3 251 73.3
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 6.4e-103 377.9 250 71.6
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 8.3e-103 377.5 251 70.5
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.1e-102 377.1 250 69.2
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.9e-102 376.3 251 71.7
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.2e-101 373.6 250 70.8
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.3e-100 369.4 281 65.5
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 8.6e-100 367.5 265 66.8
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 9.5e-99 364.0 250 66.4
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.4e-97 360.1 222 77.5
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.9e-95 352.4 247 67.2
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 2.3e-92 342.8 227 71.4
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 5.2e-89 331.6 189 79.9
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 6.4e-87 324.7 243 59.3
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 7.1e-86 321.2 253 60.1
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 9.2e-86 320.9 253 63.2
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.8e-82 309.3 252 58.7
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 4.9e-79 298.5 166 80.7
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 6.4e-79 298.1 167 80.2
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 3.2e-78 295.8 166 80.1
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.1e-77 293.1 392 44.1
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.1e-77 293.1 392 44.1
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.3e-74 283.9 250 56.4
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.8e-71 272.3 166 72.9
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 4.6e-69 265.4 248 51.6
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 2.1e-66 256.5 131 87.0
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.8e-65 253.4 156 75.6
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 3.0e-60 236.1 213 57.3
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 3.7e-58 229.2 258 45.7
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 4.0e-57 225.7 247 50.2
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 1.4e-54 217.2 265 44.5
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.7e-52 208.4 135 75.6
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.9e-51 206.8 140 63.6
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 3.7e-50 202.6 247 47.4
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 2.3e-44 183.3 98 84.7
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.3e-42 177.6 213 43.7
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.2e-40 171.0 124 63.7
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 8.5e-31 138.3 75 80.0
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.1e-27 127.9 71 78.9
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 5.7e-27 125.6 98 59.2
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 5.7e-27 125.6 70 75.7
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 5.7e-27 125.6 70 75.7
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.5e-22 109.0 75 73.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.6e-21 107.5 89 64.0
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 3.6e-21 106.3 80 66.2
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 2.2e-18 97.1 91 56.0
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 7.7e-16 88.6 85 54.1
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.2e-15 87.0 47 85.1
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-08 64.7 83 51.8
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.5e-08 63.2 62 48.4
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 4.5e-08 62.8 57 57.9
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 7.7e-08 62.0 157 29.3
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.0e-07 61.6 169 28.4
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 4.2e-06 56.2 50 58.0


User provided reference genes

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