Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.1e-163 578.9 289 100.0
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 4.2e-127 458.4 234 96.6
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 2.9e-112 409.1 276 73.6
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 3.8e-112 408.7 288 77.4
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.1e-108 397.1 282 71.3
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 2.5e-108 396.0 276 72.8
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.4e-106 389.4 273 70.7
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 3.1e-106 389.0 281 71.9
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 5.3e-106 388.3 286 70.6
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 6.9e-106 387.9 278 71.2
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.0e-105 386.3 278 71.6
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.0e-105 386.3 284 70.8
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.5e-105 385.2 261 73.6
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 5.8e-105 384.8 266 73.3
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 5.8e-105 384.8 266 73.3
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 7.6e-105 384.4 284 70.4
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 9.9e-105 384.0 280 71.1
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.3e-104 383.6 280 69.6
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 2.9e-104 382.5 276 70.3
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 3.8e-104 382.1 276 70.3
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 8.4e-104 380.9 278 69.1
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.4e-103 380.2 276 69.9
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 4.2e-103 378.6 276 69.6
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 5.5e-103 378.3 283 66.8
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 5.5e-103 378.3 265 70.6
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 5.5e-103 378.3 307 65.8
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 7.1e-103 377.9 265 72.1
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 9.3e-103 377.5 284 66.2
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 9.3e-103 377.5 272 71.3
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.2e-102 377.1 264 71.6
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-102 376.7 276 68.1
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 4.6e-102 375.2 278 67.3
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 4.6e-102 375.2 278 67.3
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 7.9e-102 374.4 280 69.6
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 7.9e-102 374.4 280 69.6
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.0e-101 374.0 278 68.3
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.0e-101 374.0 283 69.3
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.0e-101 374.0 245 74.3
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.0e-101 374.0 284 68.0
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.3e-101 373.6 266 69.9
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.8e-101 373.2 280 69.6
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 3.9e-101 372.1 248 71.0
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 3.9e-101 372.1 278 67.6
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 3.9e-101 372.1 260 71.2
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 3.9e-101 372.1 275 69.1
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.7e-101 371.3 277 69.3
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.7e-101 370.9 257 72.8
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.7e-101 370.9 277 69.3
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 8.7e-101 370.9 284 66.5
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-100 370.5 281 68.0
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.9e-100 369.8 278 66.5
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.9e-100 369.8 278 66.5
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.9e-100 369.8 261 69.7
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.5e-100 369.4 278 66.2
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.5e-100 369.4 278 67.3
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 2.5e-100 369.4 251 74.5
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 2.5e-100 369.4 285 67.4
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 2.5e-100 369.4 285 67.4
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 3.3e-100 369.0 279 67.4
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 3.3e-100 369.0 252 73.0
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 3.3e-100 369.0 284 66.2
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 9.6e-100 367.5 255 70.6
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 9.6e-100 367.5 255 70.6
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 9.6e-100 367.5 237 73.4
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.3e-99 367.1 274 67.2
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.6e-99 366.7 285 67.0
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.6e-99 366.7 284 66.2
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 2.1e-99 366.3 266 68.8
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 2.1e-99 366.3 255 72.2
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.2e-99 364.8 238 74.8
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 8.2e-99 364.4 261 70.9
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.4e-98 362.8 283 65.0
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 2.4e-98 362.8 253 70.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 3.1e-98 362.5 278 66.2
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.0e-98 362.1 236 71.6
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 5.3e-98 361.7 283 64.7
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 5.3e-98 361.7 249 71.1
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 6.9e-98 361.3 279 66.3
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-97 360.5 237 72.6
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.2e-97 360.5 275 65.8
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 2.6e-97 359.4 295 64.7
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.7e-96 356.7 263 69.6
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.7e-96 356.7 290 67.9
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.2e-96 356.3 277 66.4
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 2.9e-96 355.9 266 69.2
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 3.8e-96 355.5 282 64.9
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 8.4e-96 354.4 282 64.9
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.1e-95 354.0 282 67.0
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.9e-95 353.2 243 68.7
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 4.2e-95 352.1 249 69.1
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 4.2e-95 352.1 227 73.6
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 7.1e-95 351.3 252 68.7
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 1.2e-94 350.5 259 66.4
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 2.1e-94 349.7 255 66.7
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.7e-94 349.4 284 64.1
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.7e-94 349.4 251 68.1
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 6.0e-94 348.2 251 67.3
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.0e-93 347.4 245 68.2
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 8.7e-93 344.4 214 74.8
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.1e-92 344.0 280 64.6
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 4.3e-92 342.0 238 71.0
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 3.7e-91 339.0 271 63.5
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 4.8e-91 338.6 277 64.3
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 5.3e-90 335.1 268 65.3
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 5.3e-90 335.1 276 63.8
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.3e-88 330.5 277 63.9
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.7e-88 330.1 249 67.9
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.1e-87 327.4 258 63.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 3.6e-86 322.4 251 64.9
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.6e-86 322.0 279 60.6
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 6.7e-85 318.2 250 64.0
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 6.7e-85 318.2 275 59.6
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.3e-83 313.9 277 58.5
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.3e-83 313.9 285 59.3
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.2e-83 313.2 276 58.7
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 2.0e-81 306.6 235 65.5
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 4.2e-79 298.9 264 58.3
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 6.3e-75 285.0 234 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 4.1e-74 282.3 237 59.5
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.5e-73 278.9 207 71.5
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.9e-71 273.5 281 50.2
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 3.2e-71 272.7 177 75.7
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 7.2e-71 271.6 252 57.5
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.6e-70 270.4 256 53.1
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.8e-69 266.9 238 57.1
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-66 257.7 189 66.1
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 3.5e-65 252.7 227 55.1
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 9.4e-63 244.6 258 51.9
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 1.1e-58 231.1 251 51.0
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.6e-54 217.2 121 84.3
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.1e-54 215.3 182 62.1
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 8.0e-54 214.9 194 53.6
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 4.1e-50 202.6 121 76.0
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 9.1e-50 201.4 121 76.9
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.2e-46 191.0 159 60.4
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.0e-45 186.0 264 39.0
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 5.2e-45 185.7 157 61.1
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.8e-45 185.3 222 49.1
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 1.0e-40 171.4 93 88.2
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.5e-39 167.5 104 78.8
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.4e-37 161.0 221 44.3
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.1e-34 151.4 219 42.0
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 1.3e-32 144.4 183 46.4
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.7e-30 136.0 129 54.3
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-26 124.8 82 69.5
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.4e-26 124.4 156 50.0
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 2.3e-24 117.1 86 65.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 6.2e-22 109.0 194 40.7
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-21 108.2 61 78.7
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.2e-20 104.8 63 74.6
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 3.4e-20 103.2 136 41.9
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 9.9e-20 101.7 72 66.7
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-18 98.2 133 47.4
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 7.1e-18 95.5 62 69.4
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.0e-16 91.7 50 88.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 8.1e-14 82.0 131 33.6
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 1.4e-13 81.3 256 25.4
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 2.4e-13 80.5 218 27.1
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 2.2e-11 73.9 147 32.7
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 1.1e-10 71.6 129 30.2
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 3.5e-09 66.6 165 34.5
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 1.1e-07 61.6 119 31.9
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 2.8e-06 57.0 135 29.6
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 2.8e-06 57.0 155 26.5


User provided reference genes

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