Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 4.7e-97 357.8 177 100.0
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.5e-42 176.0 165 58.2
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 8.1e-41 171.0 137 62.8
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 8.4e-38 161.0 134 59.0
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.3e-27 126.3 126 53.2
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 7.4e-26 121.3 126 50.8
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 1.5e-23 113.6 132 48.5
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 2.2e-22 109.8 128 47.7
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 3.0e-19 99.4 125 42.4
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 3.9e-19 99.0 122 43.4
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 1.5e-18 97.1 124 40.3
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 1.9e-18 96.7 143 37.1
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.5e-18 96.3 121 39.7
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.5e-18 96.3 118 43.2
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.5e-18 96.3 132 39.4
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 4.3e-18 95.5 124 44.4
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 4.3e-18 95.5 133 41.4
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 5.7e-18 95.1 128 38.3
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 5.7e-18 95.1 134 42.5
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 9.6e-18 94.4 122 40.2
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.3e-17 94.0 126 41.3
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 1.6e-17 93.6 124 40.3
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 1.6e-17 93.6 128 43.8
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 4.8e-17 92.0 125 42.4
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 4.8e-17 92.0 136 36.8
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 4.8e-17 92.0 127 39.4
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 6.2e-17 91.7 123 38.2
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 6.2e-17 91.7 141 33.3
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 8.2e-17 91.3 124 40.3
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 1.1e-16 90.9 118 39.0
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 1.1e-16 90.9 141 41.1
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.4e-16 90.5 144 34.7
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.4e-16 89.7 124 37.9
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 3.1e-16 89.4 124 37.9
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 3.1e-16 89.4 122 41.0
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 3.1e-16 89.4 150 33.3
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 4.1e-16 89.0 122 42.6
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 5.3e-16 88.6 117 40.2
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 5.3e-16 88.6 125 37.6
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 5.3e-16 88.6 128 39.8
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 6.9e-16 88.2 139 39.6
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 6.9e-16 88.2 114 43.9
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 1.5e-15 87.0 116 43.1
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 2.0e-15 86.7 127 40.9
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 2.0e-15 86.7 160 38.1
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 2.0e-15 86.7 129 34.1
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 2.6e-15 86.3 124 37.9
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 3.4e-15 85.9 123 42.3
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 4.5e-15 85.5 116 41.4
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.5e-15 85.5 129 38.8
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 5.8e-15 85.1 160 38.1
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 7.6e-15 84.7 110 38.2
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 7.6e-15 84.7 134 36.6
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 7.6e-15 84.7 116 42.2
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 1.0e-14 84.3 132 36.4
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 1.7e-14 83.6 125 36.8
AUR62005357 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.2e-14 83.2 142 37.3
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 2.2e-14 83.2 121 40.5
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 2.9e-14 82.8 118 35.6
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 3.8e-14 82.4 124 37.9
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 6.5e-14 81.6 124 37.1
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.1e-13 80.9 144 34.7
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.1e-13 80.9 133 36.1
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 1.4e-13 80.5 121 40.5
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 1.9e-13 80.1 133 36.1
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 1.9e-13 80.1 133 36.1
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 1.9e-13 80.1 121 35.5
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 1.9e-13 80.1 113 37.2
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 2.5e-13 79.7 136 40.4
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 2.5e-13 79.7 118 44.1
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 3.2e-13 79.3 139 36.0
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 3.2e-13 79.3 114 41.2
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 4.2e-13 79.0 122 37.7
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.2e-13 79.0 122 37.7
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 4.2e-13 79.0 116 41.4
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 5.5e-13 78.6 142 35.2
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 5.5e-13 78.6 127 37.8
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.2e-13 78.2 122 36.9
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 7.2e-13 78.2 125 37.6
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 9.3e-13 77.8 134 34.3
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 9.3e-13 77.8 121 38.0
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.2e-12 77.4 136 34.6
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 1.6e-12 77.0 126 38.9
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 1.6e-12 77.0 139 33.8
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.1e-12 76.6 122 36.9
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 2.1e-12 76.6 106 37.7
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.5e-12 75.9 106 37.7
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 4.6e-12 75.5 134 35.1
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 7.9e-12 74.7 137 33.6
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 7.9e-12 74.7 149 35.6
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 7.9e-12 74.7 127 33.9
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 1.0e-11 74.3 141 34.0
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.0e-11 74.3 105 38.1
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 1.3e-11 73.9 133 33.8
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 2.3e-11 73.2 142 34.5
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 2.3e-11 73.2 114 37.7
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 2.3e-11 73.2 132 33.3
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 3.0e-11 72.8 121 34.7
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 3.0e-11 72.8 121 35.5
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 3.9e-11 72.4 127 38.6
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 3.9e-11 72.4 121 33.1
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 5.1e-11 72.0 138 31.9
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.7e-11 71.6 117 39.3
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.7e-11 71.6 117 39.3
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 1.1e-10 70.9 139 32.4
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.5e-10 70.5 129 34.9
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 1.5e-10 70.5 132 30.3
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 1.9e-10 70.1 124 33.9
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 1.9e-10 70.1 133 32.3
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 1.9e-10 70.1 133 32.3
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 1.9e-10 70.1 133 32.3
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 3.3e-10 69.3 165 29.1
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 3.3e-10 69.3 132 34.1
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 4.3e-10 68.9 139 30.9
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 1.3e-09 67.4 117 38.5
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 1.6e-09 67.0 133 31.6
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 1.6e-09 67.0 132 31.8
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 2.2e-09 66.6 164 29.9
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 2.8e-09 66.2 132 34.1
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 2.8e-09 66.2 105 40.0
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 2.8e-09 66.2 102 39.2
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 2.8e-09 66.2 116 34.5
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.7e-09 65.9 117 38.5
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.3e-09 65.1 117 37.6
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 8.2e-09 64.7 138 29.0
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 1.1e-08 64.3 117 37.6
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.1e-08 64.3 114 38.6
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 4.1e-08 62.4 131 29.8
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 5.3e-08 62.0 114 34.2
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 5.3e-08 62.0 119 37.0
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 6.9e-08 61.6 117 36.8
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 9.0e-08 61.2 157 27.4
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 9.0e-08 61.2 157 27.4
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 9.0e-08 61.2 133 30.8
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 1.5e-07 60.5 115 33.9
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.0e-07 60.1 128 36.7
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 3.4e-07 59.3 115 37.4
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.4e-07 59.3 115 37.4
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.5e-07 58.9 113 36.3
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 5.9e-07 58.5 75 38.7
BolC5t31001H Brassica oleracea HOM05D003615 ORTHO05D016696 6.5e-06 55.1 90 35.6


User provided reference genes

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